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NC_021532.1__YP_008126000.1__M610_gp029__00029
Bact-VirNC_021532.1__YP_008126000.1__M610_gp029__00029
Identity
- Accession:
- NC_021532 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Taxonomy
TaxID: 1300004
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-105
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 51.0 | 5.53e-01 | 77.0% | 100.0% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 52.0 | 5.59e-01 | 80.3% | 100.0% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 50.0 | 5.02e-01 | 82.0% | 88.9% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 49.0 | 5.13e-01 | 80.3% | 100.0% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.65 | 58.0 | 4.37e-01 | 100.0% | 76.7% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 50.0 | 3.15e-01 | 86.9% | 32.3% |
| 3ervA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 50.0 | 3.51e-01 | 88.5% | 48.0% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 49.0 | 3.96e-01 | 88.5% | 51.2% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 50.0 | 3.98e-01 | 91.8% | 53.4% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 54.0 | 5.16e-01 | 98.4% | 95.7% |
| 3kbgA03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 49.0 | 5.10e-01 | 86.9% | 100.0% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 50.0 | 4.33e-01 | 91.8% | 85.4% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 49.0 | 3.83e-01 | 91.8% | 48.2% |
| 1wjqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 48.0 | 4.44e-01 | 86.9% | 76.9% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.58 | 37.0 | 4.08e-01 | 78.7% | 97.5% |
| 1sf9A02 | 2.30.30.340 | Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains | 0.58 | 46.0 | 4.88e-01 | 88.5% | 100.0% |
| 1wjrA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 49.0 | 3.98e-01 | 98.4% | 78.0% |
| 2m9uA00 | 2.30.30.850 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 44.0 | 3.94e-01 | 88.5% | 70.8% |
| 2z3zA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.55 | 44.0 | 2.71e-01 | 88.5% | 91.7% |
| 1m7wA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.54 | 38.0 | 2.67e-01 | 77.0% | 84.8% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.54 | 42.0 | 3.99e-01 | 90.2% | 88.3% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 35.0 | 3.31e-01 | 75.4% | 96.5% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 37.0 | 2.43e-01 | 80.3% | 87.9% |
| 1m61A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 36.0 | 3.20e-01 | 82.0% | 90.4% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838561 | 3454.1.1.0 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like | 0.75 | 52.0 | 5.12e-01 | 72.1% | 81.5% |
| 5054668 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 51.0 | 5.73e-01 | 86.9% | 97.8% |
| 4997767 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 49.0 | 5.53e-01 | 70.5% | 100.0% |
| 3486330 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 55.0 | 5.96e-01 | 88.5% | 100.0% |
| 5033075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 56.0 | 5.83e-01 | 90.2% | 96.4% |
| 4946165 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 57.0 | 5.95e-01 | 98.4% | 98.2% |
| 3839768 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 52.0 | 3.17e-01 | 80.3% | 17.4% |
| 3704356 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 56.0 | 5.09e-01 | 88.5% | 73.8% |
| 4325815 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 61.0 | 3.48e-01 | 100.0% | 13.9% |
| 4225207 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.67 | 50.0 | 5.13e-01 | 86.9% | 81.7% |
| 4116921 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.66 | 51.0 | 5.21e-01 | 83.6% | 90.0% |
| 4403216 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.66 | 53.0 | 5.14e-01 | 90.2% | 87.1% |
| 3181766 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.66 | 54.0 | 5.07e-01 | 91.8% | 82.7% |
| 3931904 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.65 | 53.0 | 5.55e-01 | 98.4% | 98.2% |
| 4950396 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 51.0 | 5.31e-01 | 86.9% | 94.5% |
| 5075805 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 53.0 | 5.57e-01 | 90.2% | 100.0% |
| 3968842 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 51.0 | 4.06e-01 | 88.5% | 50.0% |
| 3970579 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.65 | 52.0 | 3.95e-01 | 90.2% | 44.7% |
| 4084190 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.64 | 49.0 | 5.03e-01 | 82.0% | 89.8% |
| 3781711 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.64 | 50.0 | 5.25e-01 | 86.9% | 92.7% |
| 3663352 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 41.0 | 4.13e-01 | 72.1% | 65.0% |
| 3862126 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.64 | 51.0 | 5.22e-01 | 100.0% | 90.0% |
| 3971603 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.64 | 53.0 | 3.47e-01 | 96.7% | 61.4% |
| 5040153 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 50.0 | 4.72e-01 | 86.9% | 100.0% |
| 3947337 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.64 | 52.0 | 3.91e-01 | 91.8% | 40.6% |
| 3302818 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.63 | 51.0 | 5.39e-01 | 98.4% | 98.2% |
| 3839849 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.63 | 50.0 | 4.94e-01 | 86.9% | 86.2% |
| 4347999 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.63 | 54.0 | 5.31e-01 | 95.1% | 87.7% |
| 4998148 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 52.0 | 5.40e-01 | 90.2% | 100.0% |
| 3278801 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.62 | 52.0 | 5.17e-01 | 96.7% | 87.7% |
| 3382832 | 4.1.1.302 ↗ | beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O | 0.62 | 49.0 | 3.52e-01 | 86.9% | 96.1% |
| 3963760 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.62 | 51.0 | 3.95e-01 | 93.4% | 44.1% |
| 4029082 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 45.0 | 4.89e-01 | 78.7% | 100.0% |
| 3443078 | 4.1.1.330 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O | 0.62 | 53.0 | 3.91e-01 | 100.0% | 76.6% |
| 4579331 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 49.0 | 4.92e-01 | 88.5% | 85.7% |
| 4536562 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 53.0 | 4.99e-01 | 98.4% | 80.0% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 52.0 | 3.56e-01 | 96.7% | 46.7% |
| 4556837 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.59 | 46.0 | 4.45e-01 | 88.5% | 74.3% |
| 3989139 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.59 | 50.0 | 4.98e-01 | 95.1% | 89.2% |
| 3948255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 50.0 | 3.98e-01 | 98.4% | 73.1% |
| 1807495 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 44.0 | 4.63e-01 | 86.9% | 96.2% |
| 4319097 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 44.0 | 4.55e-01 | 82.0% | 91.4% |
| 3743053 | 3628.1.1.1 ↗ | a+b complex topology › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › zf-TFIIIC | 0.57 | 40.0 | 2.85e-01 | 73.8% | 48.7% |
| 3918242 | 3628.1.1.1 ↗ | a+b complex topology › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › zf-TFIIIC | 0.56 | 39.0 | 2.77e-01 | 75.4% | 37.6% |
| 3486885 | 9.8.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc | 0.55 | 42.0 | 3.55e-01 | 85.2% | 95.5% |
| 5012025 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 39.0 | 3.28e-01 | 78.7% | 95.2% |
| 4944242 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.51 | 41.0 | 2.54e-01 | 96.7% | 92.8% |
| 2724208 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.51 | 34.0 | 2.56e-01 | 72.1% | 26.4% |
| 3971219 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.51 | 38.0 | 2.60e-01 | 83.6% | 83.6% |