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NC_021532.1__YP_008126018.1__M610_gp047__00047
Bact-VirNC_021532.1__YP_008126018.1__M610_gp047__00047
Identity
- Accession:
- NC_021532 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Taxonomy
TaxID: 1300004
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-144
Domain cluster:
rep: NC_021532.1__YP_008126018.1__M610_gp047__00047__D198-255
D2
high
residues 198-255
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 71.0 | 6.76e-01 | 98.3% | 77.9% |
| 1kt0A02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.70 | 62.0 | 4.97e-01 | 100.0% | 77.2% |
| 2fbiA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 41.0 | 3.21e-01 | 87.9% | 30.1% |
| 2bv6A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.10e-01 | 87.9% | 32.4% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 44.0 | 3.85e-01 | 100.0% | 60.7% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 4.31e-01 | 89.7% | 94.2% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.51 | 45.0 | 3.78e-01 | 100.0% | 58.3% |
| 1y6kR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.39e-01 | 89.7% | 82.5% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 39.0 | 3.79e-01 | 87.9% | 87.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.86 | 72.0 | 6.76e-01 | 98.3% | 75.4% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.81 | 68.0 | 5.99e-01 | 98.3% | 63.5% |
| 1030873 | 101.1.14.1 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-TevI_DNA-bd | 0.80 | 55.0 | 5.41e-01 | 98.3% | 66.7% |
| 4138417 | 284.1.1.4 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB | 0.69 | 60.0 | 5.48e-01 | 100.0% | 87.5% |
| 74633 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.69 | 60.0 | 4.83e-01 | 100.0% | 76.5% |
| 3621937 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.66 | 56.0 | 4.59e-01 | 100.0% | 78.3% |
| 5077297 | 206.1.3.41 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter | 0.60 | 41.0 | 2.54e-01 | 100.0% | 11.4% |
| 3597533 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.57 | 45.0 | 3.88e-01 | 94.8% | 75.2% |
| 3987692 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.56 | 45.0 | 4.26e-01 | 87.9% | 85.7% |
| 3949140 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.55 | 49.0 | 3.82e-01 | 98.3% | 64.2% |
| 5048741 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 39.0 | 3.29e-01 | 79.3% | 60.0% |
| 3383121 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.54 | 46.0 | 2.91e-01 | 98.3% | 97.5% |
| 4944643 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 38.0 | 3.15e-01 | 79.3% | 58.3% |
| 3302473 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.53 | 39.0 | 2.65e-01 | 84.5% | 36.9% |
| 3171365 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.53 | 46.0 | 3.42e-01 | 100.0% | 83.2% |
| 3705856 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.53 | 44.0 | 2.91e-01 | 100.0% | 45.3% |
| 3943313 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.52 | 42.0 | 3.44e-01 | 91.4% | 55.7% |
| 4024700 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 43.0 | 2.64e-01 | 100.0% | 17.6% |
| 3940821 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.50 | 38.0 | 3.02e-01 | 91.4% | 95.3% |
| 3618061 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 44.0 | 3.78e-01 | 100.0% | 64.2% |
D3
medium
residues 1-64
Domain cluster:
representative