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NC_021532.1__YP_008126021.1__M610_gp050__00050

Bact-Vir

NC_021532.1__YP_008126021.1__M610_gp050__00050

Identity

Accession:
NC_021532 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-118
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3euhD01 1.10.10.2250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 46.0 5.49e-01 85.4% 97.1%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.68 50.0 5.12e-01 90.3% 79.2%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.66 43.0 5.05e-01 84.5% 97.1%
7ewfB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 42.0 4.78e-01 81.6% 90.7%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.65 43.0 4.06e-01 88.3% 56.5%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 41.0 4.73e-01 86.4% 95.8%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.64e-01 88.3% 92.2%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.62 42.0 4.66e-01 82.5% 90.1%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.64e-01 86.4% 90.5%
3gfaA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 49.0 3.94e-01 85.4% 83.7%
1ab8A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.61 41.0 3.40e-01 70.9% 39.5%
1xb4B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.75e-01 84.5% 100.0%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.61 48.0 3.39e-01 84.5% 52.2%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 36.0 4.34e-01 82.5% 95.3%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.84e-01 85.4% 100.0%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.60 37.0 4.09e-01 79.6% 78.0%
3qz0A00 6.10.250.2300 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 40.0 4.62e-01 72.8% 92.3%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 4.15e-01 87.4% 79.1%
4s2rQ03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.59 45.0 3.25e-01 80.6% 98.3%
2np9A01 1.20.58.1300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 47.0 4.33e-01 86.4% 98.5%
3eofB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.59 48.0 3.64e-01 88.3% 61.6%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 43.0 4.35e-01 89.3% 79.0%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.67e-01 84.5% 98.8%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 36.0 3.96e-01 87.4% 78.8%
3oo3A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 46.0 3.18e-01 86.4% 75.7%
2i7hA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 48.0 3.94e-01 89.3% 79.7%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 3.95e-01 84.5% 73.9%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 33.0 3.83e-01 83.5% 80.8%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 3.94e-01 87.4% 77.0%
5tl8A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 45.0 3.02e-01 88.3% 75.1%
6al9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.56 38.0 4.05e-01 71.8% 80.2%
1bkjA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 47.0 3.64e-01 91.3% 63.9%
4i1eA03 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.56 42.0 3.78e-01 78.6% 100.0%
3iu6A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 39.0 3.50e-01 72.8% 85.3%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.55 41.0 3.88e-01 78.6% 89.3%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 47.0 4.10e-01 99.0% 72.2%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.82e-01 87.4% 81.3%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.52 41.0 4.21e-01 87.4% 98.0%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 35.0 3.36e-01 70.9% 99.2%
2z73B01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 38.0 2.64e-01 79.6% 68.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3786690 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 52.0 4.22e-01 93.2% 40.4%
3296862 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.73 48.0 5.45e-01 86.4% 92.0%
4061251 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 45.0 4.93e-01 84.5% 76.5%
4124124 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.72 49.0 5.33e-01 87.4% 84.7%
4641033 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 44.0 4.72e-01 83.5% 73.3%
3588037 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 46.0 4.56e-01 86.4% 63.6%
3958386 101.1.2.670 alpha arrays › HTH › HTH › winged helix domain › DUF4194 0.69 45.0 5.00e-01 90.3% 85.0%
3314359 320.1.1.11 a+b two layers › R3H domain-like › R3H domain › R3H domain › PF27261 0.68 39.0 4.48e-01 76.7% 77.3%
3629521 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.67 41.0 4.15e-01 89.3% 61.2%
5026732 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 44.0 4.56e-01 87.4% 73.7%
3359252 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 46.0 4.26e-01 92.2% 56.3%
4443872 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 4.13e-01 87.4% 54.8%
5063407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 40.0 4.77e-01 86.4% 92.9%
4999182 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 43.0 4.82e-01 82.5% 94.7%
3168448 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.64 46.0 4.30e-01 85.4% 60.5%
4606139 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 45.0 5.02e-01 86.4% 96.2%
5049534 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 4.93e-01 82.5% 90.6%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.63 44.0 4.81e-01 87.4% 88.2%
3738668 101.1.2.77 alpha arrays › HTH › HTH › winged helix domain › ESCRT-II 0.63 43.0 4.87e-01 84.5% 97.3%
4426232 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.61 46.0 4.85e-01 78.6% 90.0%
5029922 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.61 40.0 4.31e-01 86.4% 80.0%
4978789 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.80e-01 89.3% 89.5%
3209956 5086.1.1.179 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Spo7 0.60 42.0 3.58e-01 72.8% 73.5%
3622328 101.1.2.466 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C 0.60 41.0 4.65e-01 84.5% 98.6%
4935902 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.60 44.0 3.45e-01 85.4% 34.5%
4934328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 37.0 4.36e-01 82.5% 92.9%
5059445 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.59 44.0 4.65e-01 83.5% 87.1%
3740265 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 43.0 4.30e-01 82.5% 74.3%
4467985 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 48.0 4.87e-01 87.4% 90.0%
1145702 101.1.2.134 alpha arrays › HTH › HTH › winged helix domain › Stn1_C 0.59 44.0 4.70e-01 86.4% 93.3%
3420624 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.59 41.0 4.16e-01 86.4% 72.4%
5030899 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 38.0 4.35e-01 84.5% 95.7%
5029321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 36.0 3.08e-01 84.5% 36.5%
3812293 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.58 40.0 4.26e-01 85.4% 81.1%
3401142 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 42.0 3.42e-01 74.8% 93.3%
3638163 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.58 44.0 4.37e-01 86.4% 77.6%
4983293 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.58 40.0 4.34e-01 87.4% 87.1%
3431562 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.57 35.0 3.87e-01 79.6% 77.5%
3273692 101.1.2.615 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2, TFA2_E-tether 0.57 38.0 3.91e-01 86.4% 72.6%
3615693 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 42.0 3.32e-01 78.6% 70.9%
3518858 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 37.0 4.16e-01 83.5% 86.3%
5049355 304.103.1.1 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.57 46.0 3.50e-01 88.3% 65.2%
4976066 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 4.40e-01 84.5% 95.0%
5046424 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.56 37.0 3.61e-01 85.4% 59.1%
4361419 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.56 43.0 4.18e-01 97.1% 73.9%
4284044 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.19e-01 93.2% 96.7%
3266618 109.4.1.1948 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle 0.56 42.0 2.94e-01 79.6% 45.4%
5039584 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.56 36.0 3.89e-01 83.5% 82.5%
3539573 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 49.0 4.10e-01 100.0% 73.0%
3392763 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 4.17e-01 85.4% 89.4%
3722993 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.95e-01 85.4% 65.4%
3740979 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.55 43.0 4.36e-01 84.5% 86.7%
3297063 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.85e-01 86.4% 74.0%
5054273 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.33e-01 86.4% 50.0%
4059034 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.54 41.0 4.47e-01 90.3% 98.8%
4334068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 4.35e-01 87.4% 96.7%
3648804 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 4.03e-01 84.5% 75.7%
3251599 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 3.85e-01 85.4% 90.7%
3197431 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.52 39.0 3.02e-01 80.6% 34.3%
4999554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 4.12e-01 93.2% 90.0%
3762392 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.52 42.0 3.34e-01 89.3% 45.7%
3829267 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.52 36.0 3.50e-01 87.4% 62.5%
4473494 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 36.0 2.65e-01 79.6% 26.3%
4537424 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.75e-01 84.5% 80.0%
3278199 7552.1.1.1 a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.51 41.0 2.73e-01 88.3% 20.9%
3739861 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.50 40.0 3.86e-01 86.4% 78.3%
D2 medium residues 119-175
PDB