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NC_021532.1__YP_008126035.1__M610_gp117__00064

Bact-Vir

NC_021532.1__YP_008126035.1__M610_gp117__00064

Identity

Accession:
NC_021532 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alteromonas_phage_vB_AmaP_AD45-P1

TaxID: 1300004

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 43.0 4.73e-01 87.7% 73.1%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 48.0 4.89e-01 100.0% 77.8%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 45.0 4.47e-01 100.0% 67.1%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.66 54.0 4.91e-01 92.3% 100.0%
3hkzG00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 3.50e-01 100.0% 39.8%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 4.70e-01 100.0% 78.1%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 4.63e-01 100.0% 78.1%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 50.0 3.28e-01 90.8% 38.5%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 47.0 3.92e-01 86.2% 75.4%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 4.52e-01 100.0% 78.5%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 35.0 3.83e-01 87.7% 72.5%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.59 42.0 3.43e-01 73.8% 52.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 40.0 4.55e-01 80.0% 100.0%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.55e-01 86.2% 43.1%
2qpzA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 49.0 4.35e-01 100.0% 96.1%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 51.0 3.28e-01 100.0% 97.8%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.57 41.0 3.03e-01 80.0% 45.6%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 37.0 3.88e-01 100.0% 74.1%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 3.99e-01 84.6% 75.6%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 43.0 2.85e-01 83.1% 93.0%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.99e-01 90.8% 35.9%
1g0hA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 36.0 2.87e-01 72.3% 31.4%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.56 39.0 3.02e-01 75.4% 59.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.56 39.0 3.69e-01 76.9% 66.7%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 3.71e-01 83.1% 75.5%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 39.0 4.11e-01 76.9% 95.0%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.89e-01 83.1% 87.3%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 39.0 3.92e-01 100.0% 77.6%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.62e-01 89.2% 77.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 40.0 3.54e-01 84.6% 61.3%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.54 38.0 3.56e-01 75.4% 78.0%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 4.03e-01 89.2% 90.5%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 3.93e-01 90.8% 100.0%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.27e-01 92.3% 68.4%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 43.0 3.57e-01 95.4% 87.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 33.0 3.18e-01 92.3% 53.2%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.52 41.0 3.05e-01 89.2% 55.6%
2bh8B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 4.22e-01 98.5% 98.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.48e-01 72.3% 92.9%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 40.0 3.61e-01 87.7% 62.4%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.51 40.0 3.95e-01 89.2% 98.6%
3q7yA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 41.0 3.40e-01 92.3% 88.7%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 43.0 3.58e-01 98.5% 61.5%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 44.0 3.98e-01 100.0% 84.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946166 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 50.0 5.23e-01 100.0% 78.3%
4050524 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.71 52.0 5.24e-01 100.0% 76.9%
4972486 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 49.0 5.25e-01 100.0% 85.5%
3600862 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 48.0 4.48e-01 100.0% 58.7%
4043601 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.69 50.0 5.07e-01 100.0% 76.9%
5079023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 42.0 4.84e-01 89.2% 88.9%
4582456 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 49.0 4.85e-01 100.0% 71.4%
4039724 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 49.0 4.99e-01 100.0% 76.9%
4670334 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 48.0 4.90e-01 100.0% 75.4%
4429356 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 49.0 4.95e-01 100.0% 76.9%
3948516 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 50.0 5.09e-01 100.0% 80.0%
3317544 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 49.0 4.90e-01 100.0% 76.9%
2985816 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.66 47.0 3.64e-01 75.4% 55.9%
4975151 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 45.0 4.85e-01 100.0% 85.5%
4678731 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 47.0 4.76e-01 100.0% 76.9%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 40.0 4.25e-01 90.8% 72.7%
5017215 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 4.53e-01 100.0% 81.8%
4352991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 4.54e-01 100.0% 78.3%
2558219 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.63 52.0 3.92e-01 93.8% 92.2%
4940155 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.63 54.0 5.01e-01 98.5% 100.0%
3691059 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.63 53.0 4.00e-01 96.9% 91.8%
4100221 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 46.0 4.64e-01 100.0% 76.9%
3903484 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.63 47.0 3.99e-01 81.5% 65.5%
5057503 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 45.0 4.73e-01 100.0% 83.3%
4944450 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 54.0 4.10e-01 100.0% 90.6%
4414692 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 40.0 4.28e-01 100.0% 78.2%
4029929 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 43.0 2.98e-01 76.9% 39.6%
1933390 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 49.0 2.98e-01 92.3% 95.6%
4453243 2.1.1.219 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 0.61 49.0 4.55e-01 90.8% 85.9%
5005814 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 37.0 4.15e-01 98.5% 84.0%
423697 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 48.0 3.65e-01 90.8% 55.1%
3973473 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.20e-01 89.2% 98.9%
3875189 2.1.1.177 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.58 47.0 4.16e-01 90.8% 79.0%
3854547 220.1.1.208 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.58 45.0 3.78e-01 87.7% 69.2%
3226690 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.58 45.0 3.59e-01 87.7% 81.4%
4863023 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.57 32.0 3.53e-01 81.5% 68.8%
3239308 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 4.54e-01 86.2% 95.3%
4399115 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.57 43.0 4.36e-01 100.0% 83.1%
4168836 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.56 45.0 4.43e-01 89.2% 95.7%
3474246 2.1.1.3 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.56 44.0 4.38e-01 89.2% 98.6%
3592754 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 50.0 4.07e-01 100.0% 64.7%
3470631 292.2.1.3 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 0.55 43.0 3.50e-01 87.7% 89.2%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 36.0 3.84e-01 73.8% 81.8%
3602819 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 41.0 3.71e-01 84.6% 76.8%
5050610 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 45.0 4.43e-01 100.0% 84.3%
3204568 2.1.1.82 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_CSD1 0.54 41.0 3.31e-01 89.2% 66.7%
3237030 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.54 44.0 3.69e-01 92.3% 89.6%
3596626 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 43.0 3.64e-01 92.3% 93.9%
3912125 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.53 42.0 3.74e-01 89.2% 64.0%
3719666 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.53 42.0 3.16e-01 89.2% 62.9%
5024840 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 40.0 3.53e-01 80.0% 75.8%
4131641 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.53 37.0 3.88e-01 73.8% 82.8%
3744119 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.53 41.0 3.03e-01 87.7% 94.3%
2771922 12.2.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C 0.52 36.0 3.07e-01 73.8% 77.5%
3715059 2.1.1.3 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.52 44.0 4.23e-01 95.4% 96.0%
3970047 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 4.01e-01 87.7% 97.1%
4062751 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.52 39.0 4.02e-01 100.0% 88.3%
3389706 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 46.0 4.22e-01 100.0% 82.4%
4000809 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.51 45.0 4.02e-01 100.0% 84.2%
5065152 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.51 46.0 2.91e-01 98.5% 24.8%
4938262 3435.1.1.10 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF27341 0.51 43.0 2.99e-01 95.4% 70.2%
5001065 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.50 45.0 2.85e-01 98.5% 25.6%
999017 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.50 40.0 3.15e-01 87.7% 70.3%
3267875 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 43.0 3.80e-01 100.0% 83.0%
144948 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.50 41.0 3.48e-01 100.0% 96.0%