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NC_021532.1__YP_008126055.1__M610_gp097__00084

Bact-Vir

NC_021532.1__YP_008126055.1__M610_gp097__00084

Identity

Accession:
NC_021532 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alteromonas_phage_vB_AmaP_AD45-P1

TaxID: 1300004

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-55
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fcaA02 3.40.390.80 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Peptidase M60, enhancin-like domain 2 0.82 61.0 4.52e-01 80.0% 57.0%
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.80 61.0 4.95e-01 83.6% 54.8%
3bhnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.72 58.0 3.93e-01 90.9% 56.3%
4bkwA02 3.30.1360.220 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Domain of unknown function (DUF3480), N-terminal subdomain 0.68 47.0 3.81e-01 72.7% 87.0%
3f5dA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.67 50.0 3.45e-01 81.8% 85.0%
6jebA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.66 57.0 5.14e-01 96.4% 73.3%
2epkX01 3.30.160.230 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › N-acetyl-beta-d-glucosaminidase 0.64 51.0 4.63e-01 92.7% 91.3%
4gdhA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.64 47.0 3.25e-01 80.0% 91.6%
2yptA02 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.63 47.0 4.33e-01 89.1% 75.3%
4k2hD00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.63 46.0 3.25e-01 81.8% 89.8%
3fseA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.63 46.0 3.20e-01 81.8% 85.3%
3cyfA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.62 46.0 3.28e-01 83.6% 91.4%
2vrnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.62 49.0 3.51e-01 92.7% 95.1%
1u9cA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.62 54.0 3.61e-01 100.0% 97.3%
3ewnA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.61 45.0 2.96e-01 80.0% 69.0%
4y1eA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.61 46.0 3.39e-01 87.3% 98.8%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.61 43.0 2.72e-01 74.5% 25.8%
3er6A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 43.0 3.09e-01 81.8% 91.1%
3dmyA02 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.59 51.0 3.87e-01 100.0% 76.4%
6ks6Z02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.59 49.0 4.04e-01 98.2% 51.4%
3p9dD02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.59 47.0 3.97e-01 96.4% 51.4%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.70e-01 92.7% 58.1%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.00e-01 72.7% 29.8%
2kx7A00 3.40.50.11620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase RcsD, RcsD-ABL domain 0.58 48.0 3.93e-01 96.4% 90.1%
3uk7A01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 44.0 3.16e-01 89.1% 83.7%
4xllA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 44.0 3.19e-01 89.1% 75.5%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 3.92e-01 92.7% 71.6%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.56 48.0 3.74e-01 96.4% 48.7%
3aq1B02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.55 45.0 3.69e-01 94.5% 52.7%
6ks6G02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.55 46.0 3.83e-01 98.2% 52.9%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.55 45.0 3.43e-01 96.4% 90.6%
3nklB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 39.0 3.08e-01 80.0% 69.9%
6ldqA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 40.0 2.91e-01 87.3% 54.4%
2hekA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 45.0 2.88e-01 98.2% 21.0%
5iheB01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.51 35.0 2.20e-01 70.9% 42.6%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.51 33.0 3.68e-01 90.9% 86.0%
3fojA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.51 40.0 3.36e-01 87.3% 80.8%
3h2bB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 35.0 2.53e-01 78.2% 45.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952523 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.86 78.0 4.95e-01 100.0% 31.0%
4194668 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.82 64.0 5.11e-01 83.6% 51.4%
4967994 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.82 64.0 5.37e-01 83.6% 62.2%
5072135 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.79 69.0 4.61e-01 94.5% 31.3%
3957469 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.79 61.0 4.40e-01 83.6% 38.0%
3284013 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.77 66.0 4.28e-01 96.4% 77.1%
4033720 2498.1.1.29 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.76 61.0 4.40e-01 89.1% 45.0%
3293257 2498.1.1.72 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › BSP 0.73 65.0 4.30e-01 96.4% 69.0%
4948072 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.73 59.0 3.98e-01 89.1% 78.0%
3241212 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.72 62.0 4.03e-01 96.4% 81.7%
3470915 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.71 51.0 3.08e-01 76.4% 19.7%
3274945 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.70 51.0 3.06e-01 78.2% 21.0%
3203855 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.69 50.0 3.03e-01 78.2% 32.5%
3389181 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.69 58.0 3.82e-01 96.4% 80.4%
3390173 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.69 49.0 2.96e-01 76.4% 34.6%
3639073 4121.1.1.6 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › DUF155 0.68 61.0 3.83e-01 100.0% 34.4%
5068720 306.4.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like 0.68 47.0 4.35e-01 72.7% 67.1%
3783904 331.1.1.12 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 0.68 61.0 4.03e-01 100.0% 42.3%
3734712 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.68 61.0 3.81e-01 100.0% 35.3%
4960251 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.68 49.0 3.79e-01 80.0% 63.9%
3180442 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.67 48.0 2.90e-01 76.4% 24.3%
4997909 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.67 48.0 3.27e-01 100.0% 21.5%
4959341 2008.1.1.152 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.66 59.0 4.51e-01 100.0% 84.8%
3741139 2007.1.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI 0.66 54.0 3.60e-01 96.4% 98.0%
4402765 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 49.0 3.79e-01 81.8% 66.7%
3678551 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.66 49.0 2.89e-01 80.0% 16.6%
4959353 2498.1.1.58 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2201_N 0.66 55.0 3.93e-01 100.0% 78.4%
3991252 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 48.0 3.47e-01 81.8% 37.1%
3824569 2007.1.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI 0.65 48.0 3.32e-01 81.8% 92.0%
3887886 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.65 58.0 3.80e-01 100.0% 38.4%
4936590 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.65 53.0 3.89e-01 92.7% 66.5%
4115486 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.65 56.0 4.00e-01 96.4% 32.7%
5044802 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 49.0 3.30e-01 80.0% 44.8%
4929588 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.64 55.0 4.01e-01 100.0% 38.1%
4929660 306.4.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.64 45.0 4.21e-01 76.4% 71.4%
5072777 2007.1.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI 0.64 49.0 3.51e-01 89.1% 95.1%
3838900 2008.1.1.152 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.62 53.0 3.91e-01 98.2% 71.6%
4947514 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 50.0 3.29e-01 92.7% 45.4%
4937850 2008.1.1.114 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.61 42.0 3.29e-01 70.9% 57.5%
5019554 2007.1.1.20 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Catalase_C 0.61 47.0 3.44e-01 90.9% 89.7%
5072677 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.60 49.0 3.24e-01 92.7% 46.6%
5006204 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.60 47.0 3.29e-01 90.9% 29.8%
4045870 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.60 49.0 3.87e-01 92.7% 46.7%
3976956 2004.1.1.243 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PduV-EutP 0.59 41.0 3.09e-01 74.5% 42.0%
2496734 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 3.00e-01 72.7% 29.8%
3494153 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.58 45.0 3.09e-01 87.3% 33.5%
3838245 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 40.0 3.41e-01 70.9% 67.8%
5055574 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.58 37.0 2.57e-01 100.0% 18.0%
3386105 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.57 44.0 3.33e-01 90.9% 35.4%
3497582 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.57 49.0 3.54e-01 100.0% 33.7%
4927285 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.56 45.0 3.74e-01 92.7% 51.4%
4967919 7512.1.1.31 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.55 44.0 3.26e-01 89.1% 33.3%
5056507 306.4.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.55 41.0 3.67e-01 90.9% 82.1%
5045375 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.55 42.0 2.79e-01 85.5% 29.8%
5038820 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.55 44.0 2.92e-01 87.3% 83.3%
3496016 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.52 40.0 3.38e-01 94.5% 46.1%
5014953 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 38.0 2.86e-01 89.1% 49.4%
2420686 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.50 39.0 3.04e-01 85.5% 64.8%
3755055 331.1.1.12 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 0.50 38.0 2.99e-01 87.3% 60.7%
4948399 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.50 40.0 2.76e-01 90.9% 96.2%