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NC_021532.1__YP_008126064.1__M610_gp088__00093

Bact-Vir

NC_021532.1__YP_008126064.1__M610_gp088__00093

Identity

Accession:
NC_021532 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alteromonas_phage_vB_AmaP_AD45-P1

TaxID: 1300004

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-86
PDB
Domain cluster: rep: ON857932.1__UVN13508.1__FBPa8_0044__00043__D88-143
D2 medium residues 87-138
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cfaA01 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.86 75.0 5.36e-01 100.0% 34.7%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.85 78.0 5.67e-01 100.0% 49.6%
3ah5B00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.85 72.0 4.69e-01 98.1% 23.2%
4k6jB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.82 67.0 3.84e-01 90.4% 10.4%
2qyuA02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.80 68.0 4.49e-01 92.3% 28.2%
4c0qB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.73 62.0 3.46e-01 100.0% 13.4%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.73 53.0 4.33e-01 78.8% 50.5%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 62.0 4.57e-01 100.0% 45.0%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.71 57.0 4.98e-01 90.4% 62.5%
3ibvB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 60.0 3.30e-01 100.0% 6.7%
2b6cA01 1.20.1660.10 Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068) 0.70 61.0 4.75e-01 100.0% 45.7%
5dlqB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 55.0 3.32e-01 100.0% 23.6%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 48.0 4.68e-01 76.9% 70.7%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 56.0 3.57e-01 100.0% 50.5%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 49.0 4.41e-01 82.7% 76.3%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.66 51.0 4.42e-01 88.5% 74.4%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 52.0 3.09e-01 88.5% 48.4%
2di3B02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.64 48.0 3.54e-01 84.6% 69.0%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.63 43.0 4.54e-01 78.8% 80.9%
3mzlB02 6.10.140.1600 Special › Helix non-globular › Helix Hairpins › 0.63 42.0 4.20e-01 71.2% 66.1%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.63 48.0 4.24e-01 90.4% 59.1%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.62 48.0 3.39e-01 88.5% 56.1%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.62 46.0 4.02e-01 84.6% 69.0%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.61 47.0 3.48e-01 84.6% 77.9%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 42.0 3.59e-01 76.9% 42.9%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.59 46.0 3.89e-01 100.0% 52.3%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 3.96e-01 88.5% 69.2%
1wmgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 40.0 3.43e-01 73.1% 62.2%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.55 43.0 3.32e-01 88.5% 84.7%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.54 41.0 4.21e-01 86.5% 96.1%
3oyxA02 1.20.58.1560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 42.0 4.03e-01 94.2% 88.1%
6ukcA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 39.0 2.97e-01 78.8% 37.6%
2gloA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 43.0 4.24e-01 100.0% 100.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3421726 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.85 69.0 4.26e-01 88.5% 32.7%
4982008 842.1.1.1 ↗ a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.85 78.0 5.07e-01 100.0% 26.0%
4246528 842.1.1.1 ↗ a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.84 76.0 4.78e-01 100.0% 22.5%
3521675 109.4.1.102 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL 0.83 67.0 3.76e-01 88.5% 8.7%
3857584 109.4.1.167 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rif1_N 0.82 66.0 3.73e-01 88.5% 8.4%
3509386 109.4.1.555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 0.81 67.0 3.65e-01 92.3% 7.6%
3914850 109.4.1.156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC45-central 0.80 69.0 3.80e-01 100.0% 11.9%
3197970 109.4.1.1311 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ 0.78 68.0 3.71e-01 100.0% 11.1%
3252868 109.4.1.1745 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1, TPR_TNPO3_IPO13_2nd 0.78 69.0 3.72e-01 100.0% 5.7%
4300691 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.77 62.0 3.41e-01 88.5% 8.0%
4012901 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 62.0 3.40e-01 88.5% 7.9%
4462884 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.77 68.0 3.62e-01 100.0% 5.6%
3868038 109.4.1.53 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,Exportin-5 0.77 67.0 3.60e-01 100.0% 5.1%
3743828 109.4.1.555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 0.77 66.0 3.54e-01 100.0% 17.7%
3632612 109.4.1.1311 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ 0.77 67.0 3.92e-01 100.0% 24.5%
4075352 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.77 61.0 3.30e-01 88.5% 5.9%
3458018 6132.1.1.0 ↗ alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.76 62.0 6.30e-01 90.4% 94.0%
3884925 109.4.1.53 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,Exportin-5 0.76 67.0 3.90e-01 100.0% 13.7%
3788577 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.76 61.0 3.50e-01 88.5% 12.2%
3685236 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 60.0 3.22e-01 88.5% 5.2%
3186182 109.4.1.1235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TNPO3_IPO13_3rd 0.75 65.0 3.51e-01 100.0% 6.5%
4223250 109.4.1.112 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1 0.75 59.0 3.69e-01 88.5% 19.3%
3696472 109.4.1.555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 0.75 65.0 3.48e-01 100.0% 4.8%
4943436 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.75 56.0 3.44e-01 88.5% 14.2%
3686925 109.4.1.1482 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Xpo1, TPR_TNPO3_IPO13_2nd, TPR_TNPO3_IPO13_4th, TPR_TNPO3_IPO13_3rd 0.74 64.0 3.47e-01 100.0% 13.5%
3426213 109.3.1.143 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TMEM33_Pom33 0.74 62.0 4.11e-01 98.1% 69.3%
4344928 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.74 65.0 3.49e-01 100.0% 7.3%
3459730 601.3.1.13 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › TMEM33_Pom33 0.73 61.0 4.07e-01 98.1% 69.6%
4293040 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.73 62.0 3.39e-01 100.0% 12.4%
3309392 5054.1.1.99 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TMEM33_Pom33 0.72 61.0 4.14e-01 100.0% 74.8%
3683967 109.4.1.1310 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.72 62.0 3.95e-01 100.0% 51.3%
3408404 109.4.1.1918 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Xpo1, PF26714 0.72 60.0 3.28e-01 98.1% 11.6%
4303083 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.72 62.0 3.59e-01 100.0% 27.1%
3274166 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 61.0 4.09e-01 100.0% 51.6%
3413885 109.4.1.156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC45-central 0.71 61.0 3.56e-01 100.0% 23.3%
3510246 109.4.1.112 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1 0.71 62.0 3.54e-01 100.0% 10.2%
3413962 109.4.1.1392 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_XPO7 0.71 60.0 3.25e-01 100.0% 15.8%
3365805 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.70 60.0 3.71e-01 100.0% 44.0%
3565119 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 59.0 3.16e-01 100.0% 8.4%
1181676 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.70 60.0 3.27e-01 100.0% 6.5%
3939205 3729.1.1.0 ↗ alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain 0.70 50.0 3.73e-01 76.9% 67.4%
3656073 109.4.1.47 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.70 59.0 3.19e-01 98.1% 6.3%
3355773 109.4.1.47 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.70 58.0 3.17e-01 100.0% 12.0%
3766121 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 56.0 3.35e-01 92.3% 11.9%
3817299 109.4.1.1392 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_XPO7 0.69 59.0 3.21e-01 100.0% 5.1%
3981437 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 48.0 3.43e-01 75.0% 25.0%
3402822 109.4.1.1564 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28736, PF28737 0.68 56.0 3.32e-01 98.1% 25.4%
3495054 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.68 57.0 3.08e-01 100.0% 15.6%
3707790 109.4.1.152 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7 0.68 55.0 4.01e-01 92.3% 96.0%
3553517 109.2.1.4 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Cobalamin_bind 0.66 55.0 3.52e-01 100.0% 37.6%
4512588 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.65 52.0 3.82e-01 90.4% 40.7%
4065433 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 50.0 3.17e-01 88.5% 17.1%
3520887 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 51.0 3.65e-01 96.2% 80.6%
5028726 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.63 48.0 3.60e-01 82.7% 34.6%
None — 0.62 51.0 3.93e-01 98.1% 84.6%
3734404 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.60 40.0 3.60e-01 71.2% 50.0%
1503553 3796.1.1.1 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Isd_H_B_linker 0.58 44.0 3.96e-01 88.5% 69.2%
3172637 4048.1.1.1 ↗ alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.54 40.0 3.62e-01 98.1% 57.3%
4079380 184.1.1.1 ↗ alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N 0.51 41.0 3.92e-01 100.0% 81.5%