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NC_021536.1__YP_008126345.1__SWYG_00019__00019

Bact-Vir

NC_021536.1__YP_008126345.1__SWYG_00019__00019

Identity

Accession:
NC_021536 ↗
Kingdom:
phage

Quality

68.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-85
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4epsA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.70 57.0 3.91e-01 91.9% 42.2%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 52.0 4.83e-01 91.9% 89.6%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.63 45.0 3.86e-01 83.8% 71.0%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 3.17e-01 81.1% 52.3%
6ziwI01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 47.0 3.86e-01 94.6% 94.9%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 45.0 4.49e-01 94.6% 94.9%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.58 43.0 3.44e-01 94.6% 62.9%
4qxdA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 41.0 2.89e-01 94.6% 90.5%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 39.0 2.93e-01 81.1% 53.2%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 2.76e-01 100.0% 17.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3476979 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.73 57.0 4.25e-01 94.6% 33.0%
4006298 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.69 55.0 4.90e-01 91.9% 78.2%
3639869 223.2.1.30 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N 0.60 44.0 3.16e-01 94.6% 25.3%
4894893 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.58 45.0 3.36e-01 89.2% 50.5%
4956278 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 3.93e-01 91.9% 66.0%
3454406 375.1.1.69 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.56 43.0 4.06e-01 94.6% 74.0%
3457887 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 3.85e-01 86.5% 71.1%
3245992 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 40.0 2.56e-01 91.9% 12.8%
D2 high residues 144-168_185-298
PDB