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NC_021539.2__YP_008126713.1__LP030nr2_017__00017

Bact-Vir

Identity

Accession:: NC_021539 ↗
Kingdom:: phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Psavirus› Listeria_phage_LP-030-2

TaxID: 1173743

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 388-446

PDB

Domain cluster: rep: NC_019449.1__YP_007002359.1__F368_gp20__00020__D364-427

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cxbA01	3.30.2440.10	Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA	0.74	59.0	4.73e-01	91.5%	44.3%
1wznA02	2.20.25.110	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases	0.66	45.0	4.67e-01	71.2%	91.1%
3u1kC01	3.30.230.70	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain	0.63	52.0	3.51e-01	91.5%	50.9%
3voqA00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.62	47.0	3.74e-01	81.4%	62.1%
5agvA02	3.10.150.10	Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2	0.61	42.0	3.24e-01	71.2%	92.4%
1srqA01	3.30.1120.160	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.59	49.0	3.69e-01	89.8%	70.3%
7qi3A01	3.30.2140.20	Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold ›	0.58	47.0	2.98e-01	91.5%	77.0%
1q57G01	2.20.25.180	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.57	39.0	3.68e-01	81.4%	58.9%
8himB01	3.90.1110.10	Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2	0.56	49.0	3.67e-01	98.3%	64.9%
2zauA01	3.30.1330.10	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain	0.56	42.0	3.27e-01	81.4%	94.4%
2bszA01	3.30.2140.10	Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase	0.56	45.0	3.28e-01	91.5%	61.2%
1idpA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.55	45.0	3.42e-01	93.2%	98.0%
1kpsC00	3.10.110.10	Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme	0.54	46.0	3.45e-01	98.3%	49.4%
2hn1A01	3.30.460.20	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like	0.54	39.0	2.92e-01	76.3%	32.4%
1v89A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.53	40.0	3.20e-01	79.7%	60.2%
5fgoA00	3.10.450.700	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	37.0	3.64e-01	72.9%	71.0%
1xksA00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.53	45.0	2.82e-01	100.0%	32.1%
6qk7A01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.52	42.0	2.67e-01	89.8%	53.6%
3jbtA06	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.51	43.0	2.78e-01	100.0%	35.9%
1q48A00	3.90.1010.10	Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A ›	0.51	36.0	2.81e-01	76.3%	37.3%
3hl6A01	3.30.1300.50	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain	0.50	42.0	3.93e-01	94.9%	100.0%
2kheA00	3.30.2310.20	Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like	0.50	36.0	3.20e-01	78.0%	61.8%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3590950	79.1.1.0 ↗	beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain	0.93	88.0	6.23e-01	100.0%	38.1%
3388896	79.1.1.27 ↗	beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN	0.81	74.0	5.38e-01	100.0%	42.7%
3595269	77.2.1.0 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N	0.79	72.0	4.68e-01	100.0%	25.0%
3708591	77.2.1.1 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN	0.79	71.0	4.62e-01	100.0%	24.0%
3719688	77.3.1.3 ↗	beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN	0.79	71.0	4.58e-01	100.0%	23.5%
3475267	77.2.1.1 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN	0.79	70.0	5.86e-01	100.0%	59.2%
3501309	77.2.1.1 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN	0.76	67.0	5.04e-01	100.0%	41.4%
3720040	77.3.1.3 ↗	beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN	0.72	64.0	5.20e-01	100.0%	55.5%
3245139	220.1.1.28 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2	0.66	49.0	3.58e-01	79.7%	46.5%
3931748	212.1.1.10 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH	0.66	55.0	4.15e-01	91.5%	78.5%
4416182	241.15.1.3 ↗	a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25	0.65	48.0	3.94e-01	78.0%	82.9%
3256680	12.1.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain	0.65	50.0	5.35e-01	88.1%	100.0%
4884147	212.1.1.10 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH	0.64	53.0	3.87e-01	91.5%	74.7%
4405347	212.1.1.10 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH	0.64	53.0	3.88e-01	91.5%	76.8%
4188291	212.1.1.10 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH	0.63	53.0	3.88e-01	91.5%	76.1%
4960033	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.63	55.0	3.92e-01	98.3%	41.1%
4101178	212.1.1.10 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH	0.63	53.0	3.91e-01	93.2%	77.4%
4132819	212.1.1.10 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH	0.63	52.0	3.81e-01	91.5%	76.8%
3223888	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.61	47.0	3.62e-01	84.7%	63.7%
3920675	295.1.1.3 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA	0.61	44.0	4.04e-01	76.3%	68.0%
4496525	212.1.1.10 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH	0.60	50.0	3.68e-01	91.5%	80.6%
3971915	212.1.1.0 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like	0.60	49.0	3.70e-01	88.1%	83.6%
3728800	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.60	53.0	3.16e-01	98.3%	47.5%
3575645	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.58	44.0	3.95e-01	79.7%	92.5%
3748485	6129.1.1.1 ↗	beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD	0.57	49.0	3.43e-01	96.6%	31.8%
4425810	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.54	41.0	4.16e-01	84.7%	91.7%
3483808	295.1.1.3 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA	0.50	38.0	3.67e-01	83.1%	72.9%
4153552	319.1.1.3 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS	0.50	34.0	2.66e-01	71.2%	55.6%

D2 high residues 473-572

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4z48A00	2.50.20.10	Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX	0.64	50.0	3.76e-01	83.0%	36.7%
3buuB00	2.50.20.10	Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX	0.63	49.0	3.76e-01	82.0%	39.5%
6u5vB07	3.30.1120.100	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.62	47.0	4.36e-01	81.0%	100.0%
3gjyA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.61	41.0	2.96e-01	91.0%	24.4%
3gvzA00	3.60.60.10	Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A	0.59	45.0	3.37e-01	81.0%	60.2%
2p12A01	2.40.380.10	Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like	0.56	44.0	3.78e-01	85.0%	76.4%
3bk5A00	2.50.20.10	Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX	0.52	43.0	3.27e-01	89.0%	65.5%
3fgbA00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.52	43.0	3.01e-01	92.0%	53.0%
2x3hA00	2.160.20.10	Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like	0.52	45.0	2.95e-01	100.0%	54.8%
1zarA02	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	31.0	3.37e-01	82.0%	72.8%

ECOD (22)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3965967	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.64	33.0	3.37e-01	80.0%	50.0%
1548777	71.1.1.8 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like	0.64	50.0	3.76e-01	83.0%	36.7%
4638995	71.1.1.15 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729	0.63	40.0	3.26e-01	73.0%	33.5%
166794	71.1.1.8 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like	0.63	48.0	3.70e-01	82.0%	38.8%
5033844	71.1.1.8 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like	0.61	48.0	3.56e-01	82.0%	34.6%
4447649	71.1.1.8 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like	0.61	47.0	3.57e-01	82.0%	36.6%
3728626	77.2.1.1 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN	0.61	50.0	4.68e-01	87.0%	90.0%
3978651	241.13.1.1 ↗	a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif	0.59	37.0	3.70e-01	70.0%	59.0%
5061559	5.1.4.235 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st	0.57	46.0	3.27e-01	89.0%	50.4%
3823787	220.1.1.74 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H	0.57	46.0	4.15e-01	86.0%	71.4%
3263006	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.56	45.0	3.88e-01	88.0%	66.3%
876	4237.1.1.1 ↗	beta barrels › FomD-like › FomD-like › FomD-like › DUF402	0.56	44.0	3.74e-01	85.0%	74.5%
5046573	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.55	44.0	3.82e-01	88.0%	65.0%
4967383	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.54	44.0	3.60e-01	88.0%	67.4%
3990708	844.1.1.0 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain	0.54	44.0	3.43e-01	88.0%	59.8%
3167783	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.53	44.0	2.99e-01	95.0%	63.2%
4980820	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.52	42.0	3.52e-01	88.0%	68.9%
166902	71.1.1.8 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like	0.52	43.0	3.27e-01	89.0%	65.5%
3998091	708.1.2.0 ↗	beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like	0.51	29.0	3.37e-01	76.0%	81.5%
3368968	331.3.1.25 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO	0.51	40.0	2.92e-01	86.0%	54.0%
3255116	4291.1.1.1 ↗	beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP	0.51	45.0	3.16e-01	100.0%	35.5%
3787121	241.15.1.0 ↗	a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain	0.50	37.0	3.44e-01	77.0%	77.6%

D3 high residues 612-707

PDB

Domain cluster: rep: LC785692.1__BEU14643.1__X__00064__D439-516

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dqlA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	28.0	2.64e-01	88.5%	40.9%
2fggA01	3.30.160.240	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738	0.55	38.0	4.27e-01	70.8%	96.0%
6vq6H01	1.10.287.3240	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	49.0	3.70e-01	94.8%	45.1%
3ig5A03	1.10.150.710	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Glutamate cysteine ligase subdomain	0.53	23.0	2.47e-01	84.4%	44.0%
7cm3A01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	44.0	3.79e-01	93.8%	89.2%
3aonA00	1.10.287.3240	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	45.0	3.57e-01	93.8%	50.0%
5nusA00	3.40.50.410	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain	0.51	36.0	2.80e-01	70.8%	59.7%
7z6eA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.51	36.0	3.38e-01	75.0%	100.0%
1k8iA01	3.10.320.10	Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1	0.50	36.0	3.98e-01	77.1%	94.8%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5048927	302.4.1.1 ↗	a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C	0.81	35.0	3.06e-01	87.5%	29.3%
3233222	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.65	51.0	3.43e-01	84.4%	50.4%
3994436	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.63	51.0	4.19e-01	85.4%	75.3%
3238943	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.62	51.0	3.50e-01	87.5%	49.1%
5059579	2003.4.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP	0.60	35.0	2.98e-01	70.8%	33.8%
5026457	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.58	54.0	4.10e-01	100.0%	100.0%
3717909	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.57	43.0	3.57e-01	78.1%	89.1%
3649895	2.6.1.1 ↗	beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase	0.57	23.0	2.49e-01	76.0%	40.5%
4984658	2003.4.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP	0.57	33.0	2.82e-01	71.9%	31.8%
4370798	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.55	46.0	3.54e-01	88.5%	78.1%
4598415	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.55	46.0	3.57e-01	88.5%	84.5%
5050213	192.2.1.87 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D	0.55	49.0	3.89e-01	96.9%	71.1%
3289549	2003.4.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP	0.55	32.0	2.77e-01	76.0%	33.8%
4943172	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.55	49.0	3.81e-01	96.9%	96.0%
4597941	3926.1.1.0 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D	0.55	48.0	3.81e-01	97.9%	63.6%
4645961	102.2.1.3 ↗	alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N	0.53	44.0	3.47e-01	87.5%	53.2%
5027304	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.53	48.0	3.90e-01	99.0%	70.3%
4195636	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.52	48.0	3.66e-01	100.0%	97.2%
3581204	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.52	39.0	2.78e-01	81.2%	72.1%
3232920	10.4.1.0 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain	0.52	24.0	2.42e-01	76.0%	35.8%

D4 medium residues 4-96

PDB

Domain cluster: rep: IMGVR_UViG_3300001784_000289-3300001784-JGI20225J20221_10000041414__D5-96

D5 medium residues 100-177

PDB

Domain cluster: rep: MK448900.1__QBX26070.1__Javan290_0016__00049__D83-163

D6 medium residues 186-203_279-344

PDB

Domain cluster: rep: IMGVR_UViG_3300009618_000029-3300009618-Ga0116127_100074338__D532-550_611-692

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06605.19 best	Prophage_tail	40.6	3.80e-10	84.5%	39.8%

CATH (37)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cddA01	2.30.300.10	Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold	0.75	62.0	4.68e-01	100.0%	39.7%
3d37B01	2.30.300.10	Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold	0.74	67.0	5.18e-01	100.0%	46.6%
2p5zX01	2.30.110.50	Mainly Beta › Roll › Pnp Oxidase; Chain A ›	0.71	59.0	4.67e-01	100.0%	45.2%
1k28D03	2.40.30.150	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3	0.70	64.0	6.13e-01	100.0%	89.5%
2f8xC03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.67	40.0	3.90e-01	97.6%	53.2%
3cnrB00	2.40.10.220	Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains	0.61	48.0	4.70e-01	100.0%	77.4%
4divV01	2.40.30.200	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.60	53.0	4.57e-01	100.0%	84.7%
2xrcC04	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.60	43.0	3.43e-01	98.8%	36.5%
1pcfA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.59	31.0	3.46e-01	98.8%	63.6%
5ygbA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.59	37.0	3.84e-01	96.4%	67.5%
4ympA00	2.60.40.1850	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.58	44.0	3.99e-01	98.8%	60.7%
3c0kA01	2.30.130.10	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain	0.58	41.0	4.39e-01	100.0%	87.3%
2gmqA00	2.40.450.10	Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain	0.58	49.0	4.71e-01	100.0%	82.8%
5dm6S01	2.40.240.10	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P	0.57	50.0	4.97e-01	98.8%	97.7%
6ziwI01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.57	40.0	4.13e-01	96.4%	78.2%
6dddH00	2.40.240.10	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P	0.56	49.0	4.82e-01	100.0%	97.8%
3cr8A01	3.10.400.10	Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase	0.56	51.0	4.26e-01	100.0%	70.9%
2pmzB07	2.40.50.150	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain	0.56	44.0	3.98e-01	88.1%	91.1%
2dbjA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	40.0	3.72e-01	97.6%	59.6%
1shyA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.55	45.0	4.25e-01	98.8%	74.5%
2gksB01	3.10.400.10	Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase	0.54	48.0	4.09e-01	100.0%	88.7%
2vgmA01	2.30.30.870	Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A	0.54	36.0	3.21e-01	100.0%	46.7%
2kx2A00	3.30.780.30	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 ›	0.54	34.0	3.35e-01	94.0%	56.2%
1s3rA02	3.30.1040.20	Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A ›	0.53	28.0	3.43e-01	91.7%	81.1%
3p24A01	2.40.128.470	Mainly Beta › Beta Barrel › Lipocalin ›	0.52	36.0	3.06e-01	100.0%	39.9%
2pfcA00	3.10.129.30	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain	0.52	45.0	3.69e-01	96.4%	70.0%
3uimA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.52	37.0	3.72e-01	96.4%	71.9%
3lpxB02	3.30.1360.40	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 ›	0.52	37.0	3.58e-01	94.0%	67.0%
6iy8A01	3.30.1380.20	Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3	0.52	45.0	3.55e-01	100.0%	64.0%
3s9xA00	3.10.400.10	Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase	0.52	44.0	3.71e-01	100.0%	78.0%
1r3eA01	3.30.2350.10	Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase	0.52	42.0	3.26e-01	95.2%	57.9%
4binA01	2.60.40.3500	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	43.0	3.93e-01	94.0%	94.0%
1m4zA01	2.30.30.490	Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain	0.51	39.0	3.03e-01	92.9%	36.2%
5cenA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	34.0	3.56e-01	95.2%	75.6%
6vbkA01	2.30.130.40	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like	0.51	43.0	4.04e-01	100.0%	76.6%
3en9A03	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	40.0	4.27e-01	91.7%	97.3%
5mj3A03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	34.0	3.40e-01	98.8%	67.8%

ECOD (47)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3590379	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.93	85.0	8.25e-01	100.0%	90.0%
4031753	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.86	71.0	6.76e-01	100.0%	76.8%
4033372	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.85	78.0	7.01e-01	100.0%	74.5%
4033714	1.1.13.7 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail	0.81	72.0	6.91e-01	100.0%	84.2%
4647050	1.1.13.56 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ	0.81	65.0	6.65e-01	100.0%	88.7%
3945543	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.77	64.0	6.42e-01	100.0%	87.1%
3972102	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.74	63.0	5.96e-01	100.0%	77.0%
4929759	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.74	68.0	5.39e-01	100.0%	95.0%
3969735	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.73	53.0	5.71e-01	100.0%	90.0%
3636050	1.1.8.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain	0.69	48.0	4.28e-01	83.3%	52.2%
3720023	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.68	53.0	4.99e-01	100.0%	70.0%
2475125	3071.1.1.7 ↗	a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637	0.66	60.0	4.86e-01	100.0%	89.9%
3353869	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.64	53.0	5.28e-01	90.5%	92.9%
4986894	310.3.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related	0.60	40.0	4.64e-01	96.4%	96.7%
4232299	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.60	52.0	5.07e-01	100.0%	96.8%
4554927	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.60	53.0	5.02e-01	100.0%	94.0%
4246654	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.60	52.0	5.00e-01	100.0%	92.0%
4128879	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.60	52.0	5.08e-01	100.0%	95.8%
3316440	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.59	42.0	3.31e-01	96.4%	34.4%
4323001	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.59	51.0	4.91e-01	100.0%	93.0%
5001719	1.1.9.50 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530	0.59	49.0	4.46e-01	100.0%	67.0%
4452931	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.59	51.0	4.82e-01	100.0%	89.5%
3590201	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.59	52.0	4.80e-01	100.0%	89.8%
4069101	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.58	51.0	4.83e-01	100.0%	91.0%
4433128	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.58	51.0	4.93e-01	100.0%	95.8%
4037542	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.58	50.0	4.82e-01	100.0%	93.0%
3627004	4955.1.1.0 ↗	a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.58	45.0	4.31e-01	100.0%	71.0%
4943219	205.1.1.123 ↗	a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer2_BFD	0.58	50.0	4.10e-01	95.2%	76.1%
4033579	1.1.13.4 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail	0.58	51.0	4.50e-01	100.0%	96.8%
4312484	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.58	50.0	4.72e-01	100.0%	92.4%
4597893	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.58	50.0	4.79e-01	100.0%	92.0%
4089549	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.57	49.0	4.81e-01	100.0%	95.8%
3262729	4956.1.1.0 ↗	a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.57	44.0	4.25e-01	100.0%	73.7%
3464174	4955.1.1.0 ↗	a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	0.57	43.0	4.15e-01	100.0%	70.0%
4990786	1.1.9.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA	0.56	42.0	3.50e-01	100.0%	45.3%
3891158	1.1.7.90 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1	0.56	46.0	4.19e-01	100.0%	67.0%
4672167	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.55	48.0	4.63e-01	100.0%	92.6%
4083330	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.55	47.0	4.61e-01	100.0%	93.7%
3528209	1170.1.1.0 ↗	beta barrels › IL8-related › IL8-related › IL8	0.55	32.0	3.48e-01	100.0%	68.6%
4073311	239.1.1.3 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p	0.54	47.0	4.51e-01	100.0%	93.0%
5044537	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.54	41.0	4.22e-01	98.8%	87.5%
3166440	206.1.1.10 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase	0.53	37.0	2.68e-01	92.9%	23.4%
3387149	1.1.9.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain	0.53	45.0	3.70e-01	100.0%	61.2%
3179623	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.51	37.0	2.54e-01	96.4%	20.3%
3807714	2002.1.1.219 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn	0.50	46.0	4.43e-01	100.0%	92.6%
3243980	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.50	37.0	2.51e-01	96.4%	19.1%
4928864	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.50	43.0	3.17e-01	96.4%	38.3%

D7 medium residues 209-277

PDB

Domain cluster: rep: CP063968.1__QPW62295.1__IG390_15080__00022__D201-256