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NC_021539.2__YP_008126719.1__LP030nr2_023__00023

Bact-Vir

NC_021539.2__YP_008126719.1__LP030nr2_023__00023

Identity

Accession:
NC_021539 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-75
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.89 61.0 6.74e-01 100.0% 86.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 5.52e-01 100.0% 71.1%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 56.0 4.75e-01 100.0% 52.8%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.68 56.0 4.96e-01 100.0% 62.9%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 46.0 4.04e-01 79.7% 47.7%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.88e-01 100.0% 82.5%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.65 54.0 4.30e-01 94.2% 76.2%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 47.0 4.27e-01 92.8% 59.3%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 50.0 4.13e-01 85.5% 71.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.63e-01 98.6% 78.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.81e-01 100.0% 87.3%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 41.0 3.54e-01 75.4% 42.3%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.61 47.0 4.22e-01 84.1% 95.9%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 56.0 4.31e-01 100.0% 49.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.60e-01 100.0% 83.3%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 53.0 3.41e-01 100.0% 88.5%
1mknA00 2.20.60.10 Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain 0.60 37.0 3.92e-01 72.5% 71.2%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.58 39.0 4.48e-01 92.8% 100.0%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.28e-01 91.3% 74.3%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 40.0 3.20e-01 73.9% 82.7%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 3.88e-01 82.6% 59.2%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 42.0 3.06e-01 78.3% 75.0%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.35e-01 98.6% 100.0%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 37.0 3.83e-01 94.2% 73.8%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 43.0 4.13e-01 87.0% 71.8%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.23e-01 97.1% 81.6%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 39.0 3.94e-01 94.2% 74.6%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.78e-01 95.7% 51.9%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 44.0 2.92e-01 85.5% 48.9%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 45.0 3.02e-01 89.9% 44.1%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 4.22e-01 91.3% 85.5%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 3.91e-01 100.0% 96.0%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 49.0 3.72e-01 100.0% 63.5%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.80e-01 97.1% 90.0%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 44.0 3.61e-01 94.2% 72.9%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 43.0 2.85e-01 88.4% 41.1%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 45.0 3.40e-01 97.1% 93.8%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 40.0 3.51e-01 85.5% 95.6%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.70e-01 85.5% 91.7%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 44.0 3.01e-01 97.1% 61.8%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.68e-01 100.0% 91.7%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 43.0 3.42e-01 94.2% 84.0%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.52 40.0 3.33e-01 87.0% 79.1%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.51 45.0 4.21e-01 97.1% 89.3%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 45.0 3.73e-01 100.0% 96.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976834 4.1.1.156 beta barrels › SH3 › SH3 › SH3 › DUF2158 0.86 54.0 6.25e-01 100.0% 88.0%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.86 59.0 6.54e-01 100.0% 89.1%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 59.0 6.08e-01 100.0% 80.0%
4093836 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 56.0 6.02e-01 100.0% 83.3%
5017073 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.76 54.0 4.12e-01 100.0% 34.0%
4928794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 48.0 5.74e-01 91.3% 100.0%
5029166 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.20e-01 100.0% 87.8%
4076295 375.1.1.88 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.73 46.0 5.02e-01 91.3% 80.0%
3589730 4.1.1.252 beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.72 62.0 5.91e-01 100.0% 81.2%
3954938 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.17e-01 100.0% 81.5%
3387410 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 47.0 3.98e-01 73.9% 49.6%
4863266 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.67 45.0 4.63e-01 100.0% 73.8%
3792117 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 49.0 5.07e-01 98.6% 81.8%
3667278 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.66 55.0 4.53e-01 94.2% 73.1%
5032125 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 37.0 2.46e-01 92.8% 14.6%
4025190 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.66 43.0 4.74e-01 92.8% 85.5%
4479389 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 45.0 3.86e-01 73.9% 50.4%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.65 49.0 4.30e-01 100.0% 54.3%
4014375 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.64 42.0 4.78e-01 91.3% 94.0%
4940436 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.63 44.0 4.01e-01 94.2% 55.6%
3473450 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.63 52.0 4.41e-01 94.2% 93.3%
3530891 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 50.0 4.35e-01 100.0% 56.0%
4674170 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.62 53.0 4.39e-01 100.0% 53.3%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.62 49.0 4.44e-01 98.6% 64.2%
4672300 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 48.0 4.15e-01 84.1% 61.0%
3718300 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 47.0 4.65e-01 85.5% 81.3%
4982262 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.60 47.0 4.61e-01 92.8% 80.0%
3627099 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 47.0 3.09e-01 85.5% 47.5%
4269457 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.59 43.0 3.51e-01 78.3% 79.9%
5022599 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 41.0 3.67e-01 75.4% 55.2%
3608487 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 4.21e-01 89.9% 90.5%
3784940 2.1.1.119 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.58 47.0 3.55e-01 89.9% 69.7%
3583473 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 46.0 2.97e-01 85.5% 44.4%
3580028 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 46.0 3.40e-01 88.4% 62.1%
4959998 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.23e-01 94.2% 76.2%
4934627 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 47.0 4.03e-01 92.8% 60.9%
5052285 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 4.18e-01 94.2% 70.5%
3241917 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 49.0 3.26e-01 97.1% 23.9%
3189470 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 47.0 4.65e-01 94.2% 88.0%
3282696 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.56 49.0 4.34e-01 97.1% 90.0%
5066760 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 45.0 3.71e-01 88.4% 81.5%
5036065 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 43.0 4.28e-01 92.8% 81.3%
3721942 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.55 35.0 3.10e-01 72.5% 42.9%
1125751 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.55 35.0 3.28e-01 72.5% 51.1%
3289254 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.55 43.0 4.01e-01 91.3% 91.6%
3581353 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 43.0 2.84e-01 88.4% 37.2%
5079413 5.1.3.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.54 47.0 3.12e-01 95.7% 25.7%
4066101 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 44.0 3.97e-01 89.9% 65.3%
4680442 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 48.0 3.62e-01 100.0% 60.0%
4391625 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 42.0 3.64e-01 88.4% 90.9%
3496857 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.95e-01 98.6% 88.6%
3270561 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 41.0 2.78e-01 88.4% 41.7%
4040973 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 40.0 4.05e-01 100.0% 84.3%
4887870 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 47.0 3.53e-01 100.0% 59.4%
3509056 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.52 38.0 3.13e-01 78.3% 77.6%
3716770 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.51 42.0 3.68e-01 92.8% 75.2%
3964724 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.51 39.0 3.12e-01 87.0% 55.5%
3961321 223.3.1.2 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 0.50 36.0 3.18e-01 98.6% 49.1%
4031750 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.50 40.0 3.59e-01 88.4% 94.9%