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NC_021559.1__YP_008130021.1__PRAG_00091__00088
Bact-VirNC_021559.1__YP_008130021.1__PRAG_00091__00088
Identity
- Accession:
- NC_021559 ↗
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Ronodorvirus›
Prochlorococcus_phage_P-SSM3
TaxID: 536453
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-53
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 57.0 | 5.23e-01 | 71.7% | 80.6% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.70 | 49.0 | 4.00e-01 | 73.6% | 63.9% |
| 2wwwA03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.69 | 47.0 | 4.51e-01 | 73.6% | 73.8% |
| 1z8fA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 46.0 | 3.58e-01 | 73.6% | 42.1% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 43.0 | 3.27e-01 | 73.6% | 36.5% |
| 3ismC01 | 1.25.40.240 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain | 0.62 | 42.0 | 3.11e-01 | 71.7% | 39.6% |
| 3oymA01 | 1.10.340.70 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.58 | 40.0 | 3.43e-01 | 73.6% | 46.2% |
| 1q0rA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 38.0 | 2.48e-01 | 84.9% | 67.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267759 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.78 | 59.0 | 4.05e-01 | 79.2% | 43.8% |
| 3600030 | 2486.1.1.0 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase | 0.78 | 53.0 | 3.26e-01 | 71.7% | 12.9% |
| 3717640 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.69 | 51.0 | 3.44e-01 | 81.1% | 84.1% |
| 3889817 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.56 | 40.0 | 3.55e-01 | 77.4% | 83.7% |