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NC_021776.1__YP_008239677.1__MS_021__00021

Bact-Vir

NC_021776.1__YP_008239677.1__MS_021__00021

Identity

Accession:
NC_021776 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VPMS1

TaxID: 1233488

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 516-589
PDB
D2 medium residues 154-267
PDB
Domain cluster: rep: KF356198.1__AGR48562.1__A4L_35__00035__D190-341
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16510.13 best P22_portal 45.1 7.70e-12 100.0% 22.3%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.62 34.0 3.72e-01 98.2% 64.9%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.59 32.0 3.72e-01 78.1% 72.8%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 35.0 4.05e-01 92.1% 91.7%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.52 47.0 3.47e-01 96.5% 41.8%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.52 46.0 3.40e-01 95.6% 43.0%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 45.0 3.37e-01 95.6% 49.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4891117 4038.1.1.11 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal 0.76 70.0 4.40e-01 100.0% 20.9%
3097399 4056.1.1.5 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P22_portal 0.75 56.0 5.58e-01 76.3% 75.0%
3998439 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.72 40.0 4.36e-01 79.8% 65.3%
3927330 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.70 39.0 4.49e-01 78.9% 74.1%
3703649 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.67 36.0 4.21e-01 93.9% 73.8%
3707862 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.65 35.0 4.13e-01 94.7% 73.8%
5022396 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.58 39.0 4.62e-01 95.6% 98.8%
3689981 511.1.1.2 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › PF27034 0.58 51.0 4.59e-01 94.7% 88.4%
3722341 243.5.1.1 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 0.55 41.0 4.46e-01 97.4% 91.6%
3257536 813.1.1.2 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 0.55 50.0 4.07e-01 100.0% 73.3%
3648228 813.1.1.2 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 0.52 46.0 3.77e-01 100.0% 72.6%
3366452 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 40.0 2.69e-01 86.0% 26.6%
D3 medium residues 303-384
PDB