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NC_021792.1__YP_008241080.1__Phi46-3_gp037__00037

Bact-Vir

NC_021792.1__YP_008241080.1__Phi46-3_gp037__00037

Identity

Accession:
NC_021792 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pachyviridae› Bacelvirus› Cellulophaga_phage_phi46:3

TaxID: 1327985

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-116
PDB
Domain cluster: rep: MF360958.1__ASV44369.1__PBI_SCTP2_354__00354__D2-109
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.77 33.0 2.53e-01 72.8% 18.7%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.73 32.0 3.78e-01 77.2% 57.5%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.71 33.0 3.58e-01 78.1% 51.6%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.63 34.0 3.65e-01 79.8% 60.0%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.62 39.0 4.25e-01 71.1% 74.5%
5cfvA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.60 37.0 3.81e-01 80.7% 65.4%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.59 35.0 3.48e-01 71.9% 55.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 31.0 3.55e-01 84.2% 70.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.58 42.0 3.90e-01 80.7% 61.2%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 4.31e-01 94.7% 85.3%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 48.0 3.80e-01 92.1% 100.0%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 30.0 3.78e-01 71.9% 90.9%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 49.0 4.19e-01 100.0% 81.0%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 32.0 2.89e-01 71.9% 42.1%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.54 48.0 4.23e-01 99.1% 77.2%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.53 44.0 4.12e-01 92.1% 100.0%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 4.10e-01 91.2% 73.0%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.52 22.0 2.55e-01 95.6% 48.2%
1p0hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 3.24e-01 92.1% 39.3%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 47.0 3.79e-01 100.0% 94.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075303 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.73 55.0 4.23e-01 95.6% 37.9%
3435396 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 42.0 4.70e-01 86.0% 83.3%
4990980 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 39.0 4.23e-01 82.5% 72.6%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.63 38.0 4.62e-01 86.0% 95.7%
4037619 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.62 42.0 4.69e-01 85.1% 92.9%
4038195 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.62 42.0 4.68e-01 85.1% 92.9%
3348017 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.61 42.0 4.64e-01 85.1% 88.9%
5018714 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 24.0 3.27e-01 88.6% 70.0%
4051753 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.59 40.0 4.39e-01 85.1% 87.8%
135591 265.1.1.4 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › PhiCb5_coat 0.59 35.0 3.48e-01 71.9% 55.7%
3492201 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.57 30.0 3.52e-01 88.6% 73.3%
5041077 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 48.0 4.07e-01 93.0% 77.9%
3244502 271.1.1.5 ↗ beta barrels › GFP-like › GFP-like › GFP-like › G2F 0.56 38.0 3.07e-01 86.0% 35.5%
5014009 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.55 40.0 3.62e-01 97.4% 54.4%
3606232 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 38.0 3.96e-01 87.7% 80.6%
3957060 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.54 38.0 3.51e-01 72.8% 64.8%
3287203 319.1.1.16 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26059 0.53 29.0 3.45e-01 97.4% 77.5%
3793525 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 34.0 3.46e-01 91.2% 65.2%
3402706 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.52 46.0 4.11e-01 100.0% 86.1%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 39.0 3.93e-01 91.2% 79.6%
3608102 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 30.0 3.68e-01 73.7% 92.9%
3215136 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 34.0 3.41e-01 90.4% 65.2%
5027066 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.52 27.0 2.68e-01 98.2% 43.2%
5068841 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.51 40.0 3.20e-01 85.1% 46.4%
5014277 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.50 28.0 3.12e-01 70.2% 68.2%
4171962 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.50 35.0 2.83e-01 72.8% 73.1%