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NC_021792.1__YP_008241147.1__Phi46-3_gp104__00104

Bact-Vir

NC_021792.1__YP_008241147.1__Phi46-3_gp104__00104

Identity

Accession:
NC_021792 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pachyviridae› Bacelvirus› Cellulophaga_phage_phi46:3

TaxID: 1327985

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-50
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h31A00 4.10.490.10 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › High potential iron-sulphur protein 0.70 52.0 4.40e-01 100.0% 47.3%
2bouA02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.65 52.0 5.09e-01 95.1% 86.7%
4blpB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 48.0 2.98e-01 90.2% 29.6%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.61 41.0 3.20e-01 73.2% 30.5%
7ob9B02 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.58 45.0 3.45e-01 87.8% 36.3%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 39.0 3.91e-01 78.0% 69.0%
1db3A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.57 47.0 3.53e-01 100.0% 86.2%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 2.83e-01 80.5% 21.9%
1lwjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 39.0 3.80e-01 75.6% 90.0%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 4.09e-01 97.6% 80.3%
1gkuB05 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.40e-01 100.0% 80.2%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 42.0 3.15e-01 92.7% 48.4%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 38.0 3.94e-01 78.0% 100.0%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 40.0 3.14e-01 87.8% 78.7%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 39.0 3.85e-01 75.6% 65.2%
1fm2B01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 40.0 2.56e-01 87.8% 49.6%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.54 42.0 2.87e-01 87.8% 54.0%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 42.0 3.38e-01 95.1% 42.6%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.60e-01 92.7% 74.0%
6n6qD00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 38.0 2.27e-01 90.2% 68.9%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.51 40.0 2.48e-01 90.2% 23.0%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 38.0 2.98e-01 95.1% 70.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3311060 386.1.1.207 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 0.70 56.0 4.71e-01 90.2% 52.9%
4292319 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.68 47.0 2.65e-01 90.2% 5.6%
3552169 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.65 52.0 4.82e-01 95.1% 70.9%
3928506 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.64 52.0 4.21e-01 100.0% 45.9%
3970061 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.64 49.0 3.08e-01 85.4% 30.0%
3919771 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.64 49.0 4.69e-01 92.7% 80.0%
3847225 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.62 49.0 4.81e-01 95.1% 86.7%
3902668 389.1.1.16 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 0.62 48.0 4.62e-01 95.1% 80.0%
3239826 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.60 44.0 2.87e-01 85.4% 89.5%
5038830 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.60 46.0 3.53e-01 87.8% 59.0%
3921458 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.59 47.0 3.67e-01 97.6% 71.4%
3707098 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 47.0 3.99e-01 100.0% 50.7%
3402721 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.58 44.0 4.29e-01 97.6% 76.0%
3933269 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.56 40.0 4.02e-01 97.6% 87.5%
3578870 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.55 40.0 3.95e-01 97.6% 74.0%
3196528 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 37.0 3.37e-01 73.2% 48.3%
3639811 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 37.0 2.40e-01 85.4% 41.1%
5043827 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 39.0 2.91e-01 100.0% 98.6%