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NC_021794.1__YP_008241268.1__Phi18-3_gp075__00075

Bact-Vir

NC_021794.1__YP_008241268.1__Phi18-3_gp075__00075

Identity

Accession:
NC_021794 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-34
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vd6C01 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.86 72.0 6.80e-01 100.0% 78.0%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.83 69.0 5.25e-01 100.0% 40.7%
1z2qA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.81 69.0 5.20e-01 100.0% 57.1%
4jcjC02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.80 62.0 5.34e-01 94.1% 53.4%
1wfkA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 67.0 5.19e-01 100.0% 67.5%
4kfzA02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.77 63.0 5.24e-01 100.0% 58.5%
2co8A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.76 61.0 4.69e-01 100.0% 39.0%
1vq8U00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.74 58.0 5.27e-01 100.0% 71.7%
2iybE00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.73 61.0 5.04e-01 100.0% 62.5%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 57.0 4.43e-01 100.0% 52.3%
2mbvA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.70 55.0 4.21e-01 100.0% 39.6%
5feyA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 53.0 4.32e-01 100.0% 50.0%
7r71A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 51.0 4.50e-01 100.0% 53.1%
5d0iB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 49.0 4.59e-01 100.0% 62.7%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 51.0 4.40e-01 100.0% 84.8%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 47.0 3.82e-01 100.0% 38.3%
5d1kB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 46.0 3.94e-01 100.0% 76.6%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.63 43.0 2.61e-01 70.6% 10.7%
2jrjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 49.0 4.54e-01 100.0% 67.3%
5z8nA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 44.0 4.22e-01 97.1% 95.8%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.60 43.0 3.67e-01 79.4% 58.2%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.58 41.0 3.01e-01 79.4% 50.9%
3r2qA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 40.0 3.12e-01 100.0% 30.3%
3ir4A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 38.0 3.18e-01 100.0% 34.6%
3m0fA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 37.0 3.05e-01 100.0% 32.9%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940041 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.91 79.0 7.83e-01 100.0% 94.3%
3201162 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.90 77.0 5.91e-01 100.0% 44.0%
3729281 377.1.1.93 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Paired_CXXCH_1 0.86 71.0 7.10e-01 97.1% 94.3%
3742454 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 68.0 6.79e-01 100.0% 94.3%
3542220 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 71.0 7.08e-01 100.0% 94.3%
3937579 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 66.0 6.81e-01 91.2% 100.0%
3933676 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.84 71.0 5.88e-01 100.0% 55.0%
3254357 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 65.0 6.69e-01 94.1% 100.0%
3563021 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.84 69.0 5.54e-01 100.0% 47.1%
5013313 377.1.3.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.84 71.0 7.07e-01 97.1% 97.1%
3208684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.83 72.0 6.00e-01 100.0% 58.3%
3538293 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.83 68.0 6.78e-01 100.0% 94.3%
3559364 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.82 67.0 6.69e-01 100.0% 94.3%
3206107 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.82 66.0 6.64e-01 100.0% 94.3%
3240391 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.82 68.0 6.75e-01 100.0% 94.3%
3782406 377.1.1.20 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.82 63.0 6.52e-01 91.2% 100.0%
5059962 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.82 68.0 5.86e-01 100.0% 74.1%
3477888 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 59.0 6.11e-01 82.4% 93.3%
3433472 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.81 67.0 6.72e-01 100.0% 94.3%
5069246 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.81 69.0 6.16e-01 100.0% 86.0%
3909123 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.81 70.0 7.02e-01 100.0% 97.1%
4349677 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.79 68.0 3.87e-01 100.0% 9.6%
3752304 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 68.0 6.78e-01 100.0% 97.1%
3849622 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.79 59.0 6.11e-01 91.2% 100.0%
3558133 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.79 68.0 5.58e-01 100.0% 52.3%
3471550 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 65.0 6.51e-01 100.0% 100.0%
3704490 376.1.1.120 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Vps39_C 0.78 61.0 5.53e-01 100.0% 64.0%
3479199 376.1.1.52 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.78 62.0 5.08e-01 97.1% 47.1%
3713186 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 60.0 3.32e-01 100.0% 5.7%
3837543 2498.1.1.51 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DA1-like 0.78 64.0 3.92e-01 100.0% 14.6%
3807167 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.77 60.0 3.56e-01 88.2% 10.9%
3508988 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 63.0 6.31e-01 97.1% 94.3%
3918878 386.1.1.247 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › LIM 0.77 63.0 5.92e-01 100.0% 82.2%
3678392 377.1.1.33 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FLZ 0.77 62.0 6.19e-01 97.1% 97.1%
3400916 377.1.1.20 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.76 60.0 5.75e-01 100.0% 75.6%
4547414 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.76 62.0 5.85e-01 100.0% 75.6%
3180279 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.76 58.0 5.92e-01 97.1% 100.0%
3642066 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.76 63.0 5.85e-01 100.0% 75.6%
3311349 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.76 61.0 4.84e-01 94.1% 42.7%
3323549 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.76 62.0 5.47e-01 100.0% 63.6%
3440301 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.76 59.0 4.93e-01 100.0% 48.6%
3424334 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 61.0 5.69e-01 100.0% 73.3%
3230468 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 64.0 5.16e-01 100.0% 60.3%
3371995 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.75 57.0 4.42e-01 100.0% 35.8%
5060499 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 58.0 5.25e-01 100.0% 78.2%
4218517 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 61.0 6.24e-01 100.0% 100.0%
3851697 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.75 62.0 5.59e-01 100.0% 68.0%
4563368 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 60.0 3.41e-01 100.0% 8.3%
3927855 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 61.0 6.12e-01 100.0% 97.1%
4421510 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 55.0 5.53e-01 85.3% 82.9%
3499694 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 53.0 5.50e-01 82.4% 90.0%
5009328 150.1.1.207 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF2175 0.74 58.0 4.31e-01 100.0% 98.1%
3656841 207.1.1.124 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › At3g27290_F_box_C 0.74 56.0 3.53e-01 85.3% 15.3%
3503755 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 61.0 5.19e-01 100.0% 57.6%
3507545 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 61.0 4.82e-01 100.0% 45.3%
3903161 377.1.1.20 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.73 56.0 5.50e-01 100.0% 82.5%
5062265 377.1.1.86 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1_2 0.72 57.0 5.24e-01 100.0% 82.0%
3170592 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.72 55.0 4.79e-01 100.0% 87.7%
3193044 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 61.0 4.46e-01 100.0% 34.7%
4028097 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.72 57.0 4.78e-01 100.0% 50.0%
3334898 376.1.1.40 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.72 55.0 4.65e-01 100.0% 51.4%
3571066 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.72 61.0 4.90e-01 100.0% 48.6%
3595539 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 53.0 4.74e-01 100.0% 55.0%
3917462 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.71 57.0 4.38e-01 100.0% 63.3%
3249848 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.71 57.0 4.46e-01 100.0% 40.0%
3538008 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 56.0 4.32e-01 100.0% 63.3%
3933197 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 56.0 5.04e-01 100.0% 70.9%
3690640 375.1.1.221 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf_Tbcl_Rhp7 0.70 58.0 5.28e-01 100.0% 68.0%
3170384 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 57.0 4.92e-01 100.0% 88.3%
3264608 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.70 53.0 4.55e-01 100.0% 54.3%
3269676 377.1.1.20 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.70 51.0 5.07e-01 94.1% 80.0%
3189914 375.1.1.221 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf_Tbcl_Rhp7 0.69 56.0 5.61e-01 94.1% 91.4%
3494950 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 56.0 4.43e-01 100.0% 42.5%
3606405 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 54.0 4.48e-01 100.0% 45.3%
3331318 376.1.1.40 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.69 55.0 4.68e-01 100.0% 55.4%
3719112 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 55.0 5.09e-01 100.0% 70.8%
3315810 376.1.1.40 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.69 53.0 5.01e-01 94.1% 75.6%
3811018 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.68 51.0 5.10e-01 88.2% 82.9%
3645378 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 53.0 4.68e-01 100.0% 56.7%
4627745 376.1.1.40 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.68 51.0 4.71e-01 100.0% 61.8%
3426375 376.1.1.40 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.68 51.0 5.05e-01 100.0% 85.0%
1323436 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.67 52.0 5.18e-01 100.0% 91.4%
3600169 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 53.0 4.48e-01 100.0% 48.6%
3700649 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 55.0 4.94e-01 100.0% 66.0%
3330286 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 49.0 4.78e-01 91.2% 75.0%
3686679 376.1.1.40 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.67 51.0 4.08e-01 100.0% 37.8%
3417355 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 51.0 4.85e-01 97.1% 73.3%
3351326 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 51.0 5.08e-01 97.1% 91.4%
3724405 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 52.0 4.18e-01 100.0% 67.5%
3597534 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 53.0 4.49e-01 100.0% 52.3%
3399231 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 47.0 4.07e-01 100.0% 82.7%
3237486 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.64 52.0 4.40e-01 100.0% 52.3%
3467671 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 47.0 4.67e-01 97.1% 92.5%
3365146 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 3.92e-01 88.2% 80.0%