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NC_021795.1__YP_008241353.1__Phi17-1_gp37__00037

Bact-Vir

NC_021795.1__YP_008241353.1__Phi17-1_gp37__00037

Identity

Accession:
NC_021795 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Helsingorvirus› Cellulophaga_phage_phi17:1

TaxID: 1327980

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-103_129-140_349-384
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jjxA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 37.0 2.54e-01 86.0% 19.5%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 40.0 3.49e-01 87.1% 49.6%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 27.0 2.89e-01 73.1% 51.8%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.50 38.0 3.61e-01 87.1% 68.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4530477 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.76 31.0 4.53e-01 74.2% 82.2%
5073085 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 29.0 2.37e-01 73.1% 25.6%
5056169 3352.1.1.15 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › GT87 0.56 40.0 2.79e-01 76.3% 70.3%
5008134 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.54 30.0 2.94e-01 73.1% 48.6%
5081635 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.53 41.0 3.39e-01 84.9% 87.4%
5071514 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 38.0 4.18e-01 87.1% 93.3%
D2 medium residues 104-128_141-222
PDB
Domain cluster: rep: IMGVR_UViG_3300005607_000407-3300005607-Ga0070740_1000028387__D193-284
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 32.0 4.01e-01 74.8% 93.5%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 30.0 3.82e-01 73.8% 93.0%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.09e-01 72.9% 82.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 29.0 3.51e-01 74.8% 83.3%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 29.0 3.73e-01 72.0% 98.2%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 35.0 3.44e-01 76.6% 61.4%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 32.0 3.60e-01 70.1% 80.3%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 30.0 3.65e-01 75.7% 88.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 31.0 3.75e-01 75.7% 98.4%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 32.0 3.64e-01 76.6% 86.7%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 30.0 3.13e-01 76.6% 61.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1557493 4056.1.1.6 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel 0.66 47.0 5.39e-01 73.8% 98.8%
3963566 4056.1.1.5 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P22_portal 0.61 43.0 3.86e-01 73.8% 98.7%
3573775 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 31.0 3.65e-01 76.6% 89.2%
3942961 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 4.35e-01 91.6% 100.0%
4170983 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 32.0 3.69e-01 76.6% 84.0%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 27.0 3.38e-01 72.0% 94.5%
D3 medium residues 246-304
PDB