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NC_021796.1__YP_008241398.1__Phi38-1_gp017__00017

Bact-Vir

NC_021796.1__YP_008241398.1__Phi38-1_gp017__00017

Identity

Accession:
NC_021796 ↗
Kingdom:
phage

Quality

54.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-50
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gvbB00 3.30.70.440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit 0.57 45.0 4.16e-01 100.0% 90.5%
3uaqB01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.31e-01 100.0% 93.6%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.50 34.0 3.66e-01 93.9% 89.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952082 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.56 39.0 2.99e-01 73.5% 34.1%
3273444 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 43.0 4.42e-01 87.8% 93.3%
5048574 2002.1.1.57 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.52 38.0 2.38e-01 85.7% 90.0%
5005242 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.51 38.0 2.62e-01 87.8% 31.8%
3390846 7516.1.1.1 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.50 39.0 2.49e-01 100.0% 15.4%
4932084 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.50 41.0 4.17e-01 100.0% 100.0%
D2 high residues 61-148
PDB