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NC_021796.1__YP_008241400.1__Phi38-1_gp019__00019
Bact-VirNC_021796.1__YP_008241400.1__Phi38-1_gp019__00019
Identity
- Accession:
- NC_021796 ↗
- Kingdom:
- phage
Quality
91.0
mean pLDDT
Taxonomy
TaxID: 1327977
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-125
Domain cluster:
rep: MK448727.1__QBX16890.1__Javan291_0014__00014__D9-113
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 47.0 | 5.86e-01 | 70.5% | 93.6% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 45.0 | 5.50e-01 | 82.0% | 88.3% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 51.0 | 5.61e-01 | 73.0% | 81.6% |
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 47.0 | 5.66e-01 | 93.4% | 92.5% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 41.0 | 5.43e-01 | 86.9% | 100.0% |
| 1u5tA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 44.0 | 5.53e-01 | 73.0% | 100.0% |
| 3cuqB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 41.0 | 5.21e-01 | 90.2% | 95.7% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 45.0 | 5.55e-01 | 77.0% | 100.0% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 43.0 | 5.37e-01 | 86.1% | 97.3% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 46.0 | 4.24e-01 | 72.1% | 52.0% |
| 3oopA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 45.0 | 4.35e-01 | 73.8% | 58.2% |
| 1z6tA04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 46.0 | 5.31e-01 | 72.1% | 95.3% |
| 2a61B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 44.0 | 4.27e-01 | 73.0% | 58.4% |
| 4xrfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 44.0 | 4.17e-01 | 70.5% | 55.6% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 43.0 | 4.17e-01 | 73.0% | 56.4% |
| 1k78B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 45.0 | 4.93e-01 | 70.5% | 95.1% |
| 3zieD00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.62 | 35.0 | 4.19e-01 | 81.1% | 81.7% |
| 6lbsB01 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.60 | 38.0 | 4.55e-01 | 87.7% | 100.0% |
| 3kn3B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 33.0 | 3.34e-01 | 75.4% | 56.7% |
| 3jamK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 4.28e-01 | 71.3% | 93.8% |
| 5optn00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 4.26e-01 | 70.5% | 98.9% |
| 5xyiK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 4.32e-01 | 70.5% | 97.8% |
| 2lycA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.55 | 49.0 | 4.82e-01 | 95.9% | 96.9% |
| 4bpe700 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 4.25e-01 | 75.4% | 95.0% |
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.52 | 31.0 | 3.85e-01 | 78.7% | 100.0% |
| 2f2uB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 36.0 | 3.19e-01 | 75.4% | 61.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042034 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.80 | 50.0 | 5.33e-01 | 70.5% | 70.0% |
| 4937136 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.80 | 49.0 | 5.44e-01 | 71.3% | 76.0% |
| 4944487 | 101.1.2.751 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6293_C | 0.79 | 50.0 | 5.24e-01 | 71.3% | 70.0% |
| 3589189 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 54.0 | 5.40e-01 | 70.5% | 70.4% |
| 3602448 | 192.8.1.449 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF7343 | 0.77 | 48.0 | 4.04e-01 | 71.3% | 38.2% |
| 5040795 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.77 | 47.0 | 5.82e-01 | 89.3% | 98.7% |
| 4940483 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.77 | 48.0 | 5.68e-01 | 72.1% | 90.6% |
| 3505845 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.74 | 52.0 | 5.74e-01 | 72.1% | 89.0% |
| 3257129 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.73 | 52.0 | 5.24e-01 | 72.1% | 73.3% |
| 5051189 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 50.0 | 5.04e-01 | 72.1% | 68.8% |
| 4951618 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.73 | 46.0 | 4.90e-01 | 71.3% | 70.9% |
| 3930245 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.72 | 51.0 | 5.39e-01 | 73.0% | 81.8% |
| 4969546 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 47.0 | 5.64e-01 | 71.3% | 100.0% |
| 4126575 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.71 | 44.0 | 4.12e-01 | 71.3% | 51.7% |
| 3883014 | 101.1.2.490 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 | 0.70 | 46.0 | 5.48e-01 | 83.6% | 100.0% |
| 3284140 | 101.1.2.87 ↗ | alpha arrays › HTH › HTH › winged helix domain › PaaX | 0.70 | 49.0 | 5.45e-01 | 72.1% | 91.6% |
| 4954889 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.70 | 38.0 | 4.96e-01 | 82.8% | 100.0% |
| 3165321 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.69 | 47.0 | 5.39e-01 | 73.8% | 94.4% |
| 5029662 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 5.09e-01 | 72.1% | 85.0% |
| 5049740 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 46.0 | 3.50e-01 | 70.5% | 72.4% |
| 4027288 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.67 | 43.0 | 4.14e-01 | 91.0% | 56.4% |
| 5041057 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 49.0 | 5.51e-01 | 95.1% | 98.9% |
| 4085907 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.64 | 45.0 | 3.22e-01 | 70.5% | 45.2% |
| 5033276 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.64 | 47.0 | 4.40e-01 | 76.2% | 62.3% |
| 5049424 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 45.0 | 4.29e-01 | 73.0% | 64.1% |
| 5022936 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 46.0 | 4.81e-01 | 73.0% | 80.9% |
| 3949310 | 101.1.2.87 ↗ | alpha arrays › HTH › HTH › winged helix domain › PaaX | 0.62 | 45.0 | 4.59e-01 | 77.9% | 76.7% |
| 3730465 | 101.1.2.281 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tfb2 | 0.61 | 43.0 | 3.23e-01 | 74.6% | 28.7% |
| 4927192 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 43.0 | 4.79e-01 | 71.3% | 100.0% |
| 5012106 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.61 | 53.0 | 5.11e-01 | 92.6% | 90.4% |
| 3512685 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.61 | 44.0 | 4.23e-01 | 88.5% | 66.2% |
| 5050621 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 42.0 | 3.53e-01 | 73.8% | 92.9% |
| 4862320 | 101.1.2.47 ↗ | alpha arrays › HTH › HTH › winged helix domain › S10_plectin | 0.56 | 39.0 | 4.34e-01 | 71.3% | 97.9% |
| 3928546 | 101.1.2.47 ↗ | alpha arrays › HTH › HTH › winged helix domain › S10_plectin | 0.56 | 39.0 | 4.23e-01 | 71.3% | 94.0% |
| 1432936 | 101.1.2.47 ↗ | alpha arrays › HTH › HTH › winged helix domain › S10_plectin | 0.55 | 39.0 | 4.21e-01 | 73.0% | 92.3% |
| 4533897 | 101.1.2.508 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25872 | 0.55 | 45.0 | 4.21e-01 | 86.9% | 84.0% |
D2
medium
residues 136-242
Domain cluster:
representative