←Back to structures
NC_021798.1__YP_008241500.1__Phi17-2_gp005__00005
Bact-VirNC_021798.1__YP_008241500.1__Phi17-2_gp005__00005
Identity
- Accession:
- NC_021798 ↗
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Taxonomy
TaxID: 1327972
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-102
Domain cluster:
rep: MG575420.1__QDU35650.1__X__00019__D2-94
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bb7A01 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.59 | 35.0 | 2.85e-01 | 74.7% | 29.3% |
| 3h27A00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.58 | 45.0 | 2.90e-01 | 83.9% | 75.8% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 37.0 | 3.70e-01 | 74.7% | 63.3% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.57 | 35.0 | 3.36e-01 | 88.5% | 51.5% |
| 3bzcA05 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 38.0 | 3.73e-01 | 70.1% | 96.9% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.56 | 38.0 | 3.66e-01 | 72.4% | 61.0% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.54 | 43.0 | 3.84e-01 | 89.7% | 96.9% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.52 | 38.0 | 3.02e-01 | 79.3% | 78.5% |
| 3pmiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.92e-01 | 70.1% | 92.3% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.52 | 39.0 | 3.43e-01 | 81.6% | 100.0% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 36.0 | 3.14e-01 | 75.9% | 69.0% |
| 3nqkA02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.51 | 35.0 | 2.96e-01 | 73.6% | 70.0% |
| 3rd7A00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.51 | 41.0 | 3.00e-01 | 93.1% | 69.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3607985 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 44.0 | 4.19e-01 | 93.1% | 72.4% |
| 5038045 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.54 | 43.0 | 2.94e-01 | 86.2% | 66.8% |
| 3706223 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 42.0 | 3.95e-01 | 85.1% | 68.6% |
| 5006274 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.53 | 40.0 | 3.48e-01 | 81.6% | 90.7% |
| 3595283 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 42.0 | 3.87e-01 | 89.7% | 66.1% |
| 3288920 | 3735.1.1.0 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein | 0.52 | 45.0 | 2.83e-01 | 100.0% | 83.6% |
| 3793656 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.51 | 40.0 | 3.40e-01 | 85.1% | 71.7% |
| 3712782 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 38.0 | 3.90e-01 | 81.6% | 87.5% |
| 4947543 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.50 | 34.0 | 3.71e-01 | 70.1% | 85.1% |