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NC_021798.1__YP_008241511.1__Phi17-2_gp016__00016

Bact-Vir

NC_021798.1__YP_008241511.1__Phi17-2_gp016__00016

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 216-326
PDB
Domain cluster: rep: MT121967.1__QIW90016.1__X__00007__D266-351
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.73 57.0 5.91e-01 96.4% 89.2%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 43.0 4.04e-01 82.0% 100.0%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 3.54e-01 70.3% 72.9%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.54 40.0 4.04e-01 77.5% 84.3%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 4.18e-01 100.0% 93.3%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 40.0 4.26e-01 97.3% 100.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003468 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.77 62.0 6.35e-01 91.0% 89.5%
4166935 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.76 59.0 6.15e-01 95.5% 90.0%
8015 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.73 57.0 5.91e-01 96.4% 89.2%
3944184 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 54.0 5.61e-01 86.5% 91.4%
4995759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 41.0 4.72e-01 77.5% 98.8%
6641 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.59 42.0 3.97e-01 73.0% 81.7%
3388541 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.59 41.0 4.39e-01 72.1% 91.6%
3220436 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.59 42.0 3.66e-01 73.9% 69.3%
3799398 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.59 41.0 3.66e-01 73.9% 70.3%
3601381 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.56 39.0 2.89e-01 70.3% 49.1%
3931696 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.56 42.0 4.34e-01 80.2% 94.3%
3934170 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.55 41.0 4.35e-01 77.5% 96.8%
3625926 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.51 36.0 2.81e-01 82.9% 32.2%
4976850 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.50 27.0 3.23e-01 79.3% 78.6%
D2 medium residues 1-73_101-117_168-195
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rniA01 3.30.720.160 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal 0.74 44.0 5.55e-01 82.2% 98.6%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 43.0 4.47e-01 87.3% 100.0%
3daoA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 42.0 4.35e-01 88.1% 100.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
7174 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.87 79.0 6.36e-01 95.8% 85.2%
3280020 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.84 75.0 6.46e-01 94.1% 92.6%
4959587 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.83 74.0 6.46e-01 94.9% 91.8%
4940784 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.81 70.0 6.35e-01 91.5% 92.9%
D3 medium residues 74-100_118-167_196-215
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.63 32.0 3.36e-01 78.4% 52.3%
1khvA05 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.52 30.0 3.03e-01 94.8% 55.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589407 592.2.1.5 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › Phage_holin_4_2 0.55 28.0 2.72e-01 73.2% 41.8%
3521708 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.52 29.0 2.11e-01 100.0% 18.2%