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NC_021798.1__YP_008241517.1__Phi17-2_gp022__00022
Bact-VirNC_021798.1__YP_008241517.1__Phi17-2_gp022__00022
Identity
- Accession:
- NC_021798 ↗
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Taxonomy
TaxID: 1327972
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-86
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3urzA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 55.0 | 3.95e-01 | 77.1% | 37.1% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.71 | 52.0 | 4.42e-01 | 80.0% | 60.0% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.68 | 52.0 | 4.40e-01 | 84.3% | 69.7% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.67 | 51.0 | 4.14e-01 | 84.3% | 83.3% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.66 | 48.0 | 4.28e-01 | 78.6% | 60.2% |
| 7qpgW01 | 1.10.357.150 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.65 | 55.0 | 4.06e-01 | 95.7% | 73.2% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.64 | 48.0 | 3.85e-01 | 84.3% | 54.5% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.62 | 45.0 | 4.23e-01 | 78.6% | 75.3% |
| 3nkuA00 | 1.10.357.170 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.61 | 51.0 | 3.93e-01 | 97.1% | 71.6% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 42.0 | 3.92e-01 | 77.1% | 60.2% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 36.0 | 4.08e-01 | 80.0% | 88.2% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.56 | 40.0 | 3.82e-01 | 82.9% | 61.4% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 40.0 | 4.16e-01 | 77.1% | 92.1% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 43.0 | 3.77e-01 | 85.7% | 61.3% |
| 2lo6A00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 45.0 | 3.51e-01 | 91.4% | 63.0% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 39.0 | 3.75e-01 | 78.6% | 86.9% |
| 1hi8A02 | 1.10.490.60 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain | 0.51 | 39.0 | 3.22e-01 | 85.7% | 72.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940779 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 52.0 | 4.60e-01 | 80.0% | 85.7% |
| 3605793 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.70 | 52.0 | 5.15e-01 | 80.0% | 80.0% |
| 3788338 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.69 | 51.0 | 5.01e-01 | 78.6% | 85.1% |
| 3423081 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.69 | 51.0 | 5.24e-01 | 80.0% | 98.5% |
| 3321233 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.68 | 52.0 | 4.97e-01 | 84.3% | 69.4% |
| 3442456 | 109.4.1.110 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mad3_BUB1_I | 0.68 | 55.0 | 4.41e-01 | 91.4% | 51.0% |
| 3668118 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.67 | 51.0 | 4.97e-01 | 84.3% | 83.7% |
| 5024797 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 48.0 | 4.91e-01 | 77.1% | 90.8% |
| 2492494 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.66 | 47.0 | 4.39e-01 | 78.6% | 67.0% |
| 4025271 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.64 | 46.0 | 4.22e-01 | 78.6% | 76.0% |
| 5024095 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.62 | 45.0 | 3.18e-01 | 80.0% | 23.9% |
| 3905682 | 601.29.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like | 0.61 | 51.0 | 4.46e-01 | 91.4% | 62.9% |
| 3636208 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.61 | 51.0 | 3.20e-01 | 97.1% | 42.8% |
| 3506685 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.60 | 44.0 | 4.40e-01 | 80.0% | 77.3% |
| 3611927 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.60 | 48.0 | 4.23e-01 | 91.4% | 73.6% |
| 3915586 | 109.4.1.484 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HPS3_C | 0.58 | 47.0 | 3.05e-01 | 94.3% | 30.2% |
| 3660851 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.58 | 45.0 | 3.26e-01 | 82.9% | 75.1% |
| 3424523 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.58 | 42.0 | 3.93e-01 | 81.4% | 83.2% |
| 3618722 | 101.31.1.2 ↗ | alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit › Swi3 | 0.57 | 45.0 | 4.32e-01 | 87.1% | 75.0% |
| 5029931 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 41.0 | 4.14e-01 | 84.3% | 81.4% |
| 119428 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.56 | 49.0 | 3.50e-01 | 98.6% | 49.3% |
| 3896722 | 622.6.1.0 ↗ | alpha bundles › YvfG-like › NLR family member X1 C-terminal domain › NLR family member X1 C-terminal domain | 0.55 | 45.0 | 2.90e-01 | 91.4% | 63.5% |
| 55469 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.51 | 41.0 | 4.00e-01 | 94.3% | 100.0% |