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NC_021798.1__YP_008241543.1__Phi17-2_gp048__00048

Bact-Vir

NC_021798.1__YP_008241543.1__Phi17-2_gp048__00048

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

50.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 637-772
PDB
Domain cluster: rep: PH2015_22_scaffold_0_prodigal-single.1__X__X__00160__D748-882
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.71 41.0 5.24e-01 99.3% 100.0%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.69 48.0 5.39e-01 100.0% 94.2%
3m07A04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 35.0 4.71e-01 100.0% 97.1%
3aj7A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 39.0 4.94e-01 100.0% 100.0%
5zceA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 38.0 4.95e-01 99.3% 100.0%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 46.0 5.30e-01 99.3% 99.0%
2xn2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 45.0 5.24e-01 99.3% 97.9%
7vt9A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 37.0 4.72e-01 97.8% 100.0%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 42.0 4.84e-01 97.8% 92.6%
2ze0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 38.0 4.77e-01 99.3% 98.7%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 44.0 5.09e-01 99.3% 98.9%
1wzlA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 40.0 4.82e-01 97.8% 100.0%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 38.0 4.73e-01 99.3% 98.8%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 38.0 4.67e-01 100.0% 100.0%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 35.0 4.34e-01 99.3% 92.4%
1j0hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 38.0 4.64e-01 98.5% 98.8%
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.62 24.0 3.56e-01 100.0% 79.0%
4aeeA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 30.0 4.05e-01 99.3% 94.0%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.61 55.0 5.06e-01 100.0% 97.7%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.60 54.0 4.85e-01 100.0% 97.4%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 39.0 4.52e-01 94.1% 100.0%
6g47A00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.58 53.0 4.90e-01 100.0% 97.7%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 4.29e-01 99.3% 87.9%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.56 52.0 5.18e-01 100.0% 98.6%
2lhfA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 45.0 4.08e-01 86.8% 94.9%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 43.0 4.22e-01 85.3% 93.3%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 48.0 3.62e-01 100.0% 98.5%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.52 41.0 3.64e-01 84.6% 68.8%
3ammA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 47.0 3.84e-01 100.0% 96.9%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 47.0 4.54e-01 100.0% 98.1%
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 46.0 3.99e-01 99.3% 92.2%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 46.0 3.56e-01 100.0% 93.2%
2bzvA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.52 47.0 4.62e-01 100.0% 97.9%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 46.0 3.64e-01 100.0% 93.4%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.60e-01 100.0% 97.6%
2q1fA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 46.0 3.63e-01 100.0% 93.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2491361 5092.1.1.0 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins 0.85 77.0 7.84e-01 100.0% 98.5%
3164980 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.77 67.0 6.95e-01 99.3% 99.2%
961561 5092.1.1.4 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.68 48.0 5.40e-01 100.0% 95.1%
2641390 12.1.1.75 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SusG_C 0.67 36.0 4.71e-01 100.0% 100.0%
3941951 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.67 38.0 4.82e-01 99.3% 100.0%
4826520 12.1.1.53 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C_2 0.66 37.0 4.77e-01 98.5% 100.0%
1965 12.1.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.65 42.0 4.97e-01 97.8% 98.9%
1171323 12.1.1.57 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SMMA_C 0.61 31.0 4.06e-01 100.0% 94.1%
5065774 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 38.0 4.32e-01 99.3% 92.0%
3674091 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.57 34.0 2.94e-01 100.0% 38.9%
3886769 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 48.0 3.65e-01 100.0% 73.8%
4996174 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 38.0 3.68e-01 75.7% 83.9%
4224449 5084.1.1.29 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 0.52 42.0 3.90e-01 86.8% 92.0%
4099548 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.52 42.0 4.10e-01 86.8% 92.7%
3980621 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.51 41.0 3.53e-01 84.6% 60.5%
4009646 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.51 43.0 3.36e-01 90.4% 61.0%
D2 medium residues 1-53
PDB
D3 medium residues 341-354_368-381_398-412
PDB
D4 medium residues 440-491
PDB