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NC_021798.1__YP_008241551.1__Phi17-2_gp056__00056

Bact-Vir

NC_021798.1__YP_008241551.1__Phi17-2_gp056__00056

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 96-135
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b22A00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.64 43.0 3.66e-01 70.0% 92.9%
2gz4A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.62 46.0 2.92e-01 100.0% 16.0%
3icjA03 3.10.310.70 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.61 43.0 3.22e-01 75.0% 68.6%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 3.32e-01 97.5% 29.4%
6mfcA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 2.47e-01 82.5% 49.7%
3vpsB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 44.0 2.79e-01 100.0% 35.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607942 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.64 37.0 2.76e-01 100.0% 24.2%
3212951 109.4.1.1251 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_XPO7 0.58 42.0 2.27e-01 80.0% 8.3%
3962239 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.52 44.0 2.79e-01 95.0% 39.5%