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NC_021798.1__YP_008241559.1__Phi17-2_gp064__00064

Bact-Vir

NC_021798.1__YP_008241559.1__Phi17-2_gp064__00064

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

View cluster (60 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58_162-218
PDB
Domain cluster: rep: NC_041872.1__YP_009594072.1__FDG89_gp16__00016__D3-54_166-234
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zy2A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 42.0 3.90e-01 92.9% 58.8%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 35.0 3.88e-01 90.3% 82.4%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.54 40.0 3.92e-01 92.9% 72.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315918 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.62 46.0 4.06e-01 77.9% 81.8%
3645540 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.58 45.0 3.47e-01 82.3% 35.9%
5023832 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.55 36.0 4.21e-01 85.0% 100.0%
3177874 327.11.2.19 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.55 48.0 4.31e-01 100.0% 95.8%
3200936 5001.1.1.85 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin 0.51 36.0 2.86e-01 71.7% 89.2%
3283778 148.1.3.314 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DndB 0.51 40.0 3.62e-01 99.1% 61.5%
4021885 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.50 36.0 2.83e-01 72.6% 74.3%
D2 high residues 61-160
PDB
Domain cluster: rep: IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074962__D73-171
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1whoA00 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.66 45.0 4.61e-01 96.0% 74.5%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 47.0 5.13e-01 94.0% 97.5%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 4.67e-01 99.0% 80.6%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.54e-01 97.0% 82.8%
1k85A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.52e-01 99.0% 81.8%
1ypzF01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.89e-01 94.0% 80.5%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.61 51.0 5.31e-01 93.0% 97.9%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 4.49e-01 96.0% 83.5%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 43.0 4.79e-01 94.0% 97.3%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 4.65e-01 98.0% 85.4%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 41.0 4.29e-01 97.0% 76.7%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 4.83e-01 98.0% 85.7%
5e4sA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.57e-01 95.0% 83.0%
2ee2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 4.35e-01 92.0% 82.8%
1fnfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.63e-01 98.0% 87.6%
7mxdX01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.70e-01 94.0% 83.2%
2q7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 4.04e-01 93.0% 80.2%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 4.15e-01 95.0% 80.5%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.57 48.0 3.67e-01 100.0% 39.7%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.57 39.0 3.65e-01 70.0% 96.1%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 4.15e-01 92.0% 77.1%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.52e-01 99.0% 87.6%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.33e-01 99.0% 87.5%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 4.31e-01 95.0% 88.1%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.45e-01 99.0% 90.0%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 50.0 4.32e-01 100.0% 90.4%
1ah1A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.41e-01 94.0% 78.3%
6ovbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 49.0 4.28e-01 99.0% 88.3%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 33.0 3.64e-01 95.0% 74.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 29.0 3.49e-01 95.0% 78.1%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 38.0 3.92e-01 89.0% 76.3%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.34e-01 96.0% 92.0%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 42.0 3.91e-01 98.0% 65.2%
2fsuA00 3.40.50.11310 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Bacterial phosphonate metabolism protein PhnH 0.54 42.0 3.58e-01 85.0% 95.9%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 42.0 3.60e-01 87.0% 78.5%
4bfiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.41e-01 95.0% 85.7%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.53 42.0 4.44e-01 92.0% 96.6%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 40.0 4.33e-01 99.0% 98.8%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.52 41.0 3.46e-01 89.0% 88.2%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 4.32e-01 98.0% 93.9%
2kzbA00 2.60.40.2830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.87e-01 96.0% 73.7%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 45.0 4.14e-01 97.0% 76.2%
4yxtA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 37.0 3.30e-01 78.0% 98.7%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 4.20e-01 99.0% 92.5%
4cp9A00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 44.0 4.18e-01 100.0% 97.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1790393 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 45.0 4.89e-01 97.0% 91.5%
4858247 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 45.0 4.22e-01 98.0% 60.0%
3577879 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 43.0 4.51e-01 94.0% 80.0%
1478 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.62 45.0 4.70e-01 99.0% 81.9%
3396964 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.64e-01 95.0% 83.3%
4636885 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 43.0 4.84e-01 94.0% 97.3%
1479 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 43.0 4.54e-01 97.0% 82.8%
2556060 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 44.0 4.88e-01 97.0% 97.4%
3528265 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 41.0 4.42e-01 98.0% 82.4%
3885397 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 41.0 3.84e-01 100.0% 53.8%
3844479 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 42.0 4.55e-01 99.0% 85.9%
1540 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 43.0 4.49e-01 99.0% 80.6%
4660673 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 43.0 4.65e-01 97.0% 89.4%
4942961 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.60 45.0 4.57e-01 99.0% 80.0%
3907835 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 43.0 4.32e-01 99.0% 75.0%
4230122 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 42.0 4.29e-01 97.0% 75.0%
1542 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 42.0 4.22e-01 99.0% 72.5%
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 44.0 4.31e-01 99.0% 71.8%
2995198 10.2.1.54 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.59 52.0 4.29e-01 100.0% 87.4%
3975044 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 42.0 4.73e-01 97.0% 100.0%
4268481 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.59 46.0 3.75e-01 84.0% 62.7%
5056535 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 4.40e-01 96.0% 90.0%
4205165 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.82e-01 97.0% 96.5%
3537607 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 4.33e-01 98.0% 84.7%
3387360 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 42.0 4.50e-01 98.0% 89.4%
4654790 281.1.1.1 ↗ a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.58 48.0 3.90e-01 93.0% 89.2%
4938522 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 46.0 4.85e-01 97.0% 94.4%
3574007 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 43.0 4.40e-01 95.0% 83.2%
5003891 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.57 43.0 3.64e-01 100.0% 47.1%
5069408 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 46.0 4.84e-01 95.0% 96.7%
3201304 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.57 44.0 3.49e-01 85.0% 76.7%
3776567 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 42.0 3.82e-01 99.0% 58.5%
4611643 281.1.1.1 ↗ a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II 0.56 47.0 3.71e-01 93.0% 82.3%
4954736 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 43.0 4.62e-01 92.0% 94.1%
2554272 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.56 43.0 3.26e-01 83.0% 78.1%
3976133 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 46.0 4.69e-01 98.0% 93.7%
3481360 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.55 41.0 3.61e-01 97.0% 51.6%
3905573 11.1.1.135 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Tie2_1 0.55 43.0 4.33e-01 92.0% 85.0%
4992169 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.46e-01 99.0% 80.7%
4194151 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 43.0 4.53e-01 98.0% 97.8%
4010630 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.53 41.0 2.75e-01 99.0% 19.5%
5051220 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 41.0 4.32e-01 95.0% 94.4%
3393238 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 35.0 3.72e-01 99.0% 76.7%
3872130 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.53 40.0 2.74e-01 81.0% 41.3%
4625449 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 42.0 4.43e-01 96.0% 97.8%