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NC_021798.1__YP_008241560.1__Phi17-2_gp065__00065
Bact-VirNC_021798.1__YP_008241560.1__Phi17-2_gp065__00065
Identity
- Accession:
- NC_021798 ↗
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Taxonomy
TaxID: 1327972
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-182
Domain cluster:
representative
D2
medium
residues 185-325
Domain cluster:
rep: NC_041872.1__YP_009594071.1__FDG89_gp15__00015__D171-277
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tpmB00 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.54 | 36.0 | 3.67e-01 | 78.0% | 67.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4163672 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.78 | 34.0 | 4.67e-01 | 81.6% | 81.4% |
| 4339052 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.76 | 33.0 | 4.33e-01 | 81.6% | 71.2% |
| 4504505 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.75 | 33.0 | 4.81e-01 | 81.6% | 95.0% |
| 4452602 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 3.46e-01 | 90.8% | 75.1% |
| 4485228 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 3.42e-01 | 90.8% | 73.0% |
| 4002965 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.52 | 33.0 | 3.46e-01 | 76.6% | 69.2% |
| 3980115 | 5069.1.1.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm | 0.50 | 34.0 | 3.44e-01 | 95.0% | 67.8% |
| 3670166 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.50 | 37.0 | 2.71e-01 | 78.0% | 65.9% |