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NC_021798.1__YP_008241585.1__Phi17-2_gp090__00090

Bact-Vir

NC_021798.1__YP_008241585.1__Phi17-2_gp090__00090

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.84 73.0 7.24e-01 100.0% 91.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.83 65.0 6.96e-01 96.4% 100.0%
4biuE01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.83 71.0 5.87e-01 100.0% 54.1%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 70.0 6.71e-01 100.0% 81.5%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 62.0 6.58e-01 98.2% 93.9%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 73.0 6.59e-01 100.0% 74.7%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.81 70.0 5.63e-01 100.0% 50.9%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.80 69.0 6.82e-01 100.0% 90.0%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 57.0 6.31e-01 85.7% 100.0%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 71.0 6.92e-01 100.0% 90.3%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 66.0 6.05e-01 100.0% 70.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 70.0 6.48e-01 100.0% 97.2%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 68.0 6.73e-01 100.0% 93.1%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.79 70.0 6.05e-01 100.0% 69.8%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 70.0 6.25e-01 100.0% 71.8%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.78 66.0 6.51e-01 96.4% 88.1%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 67.0 6.43e-01 100.0% 85.9%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.77 63.0 6.09e-01 98.2% 80.0%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.77 59.0 6.18e-01 94.6% 94.0%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 67.0 6.67e-01 98.2% 96.6%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 65.0 6.09e-01 94.6% 100.0%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 62.0 5.66e-01 100.0% 66.7%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.76 68.0 4.48e-01 100.0% 43.2%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 67.0 6.43e-01 100.0% 92.2%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.74 51.0 4.99e-01 82.1% 66.7%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.74 64.0 5.90e-01 100.0% 76.1%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.73 56.0 4.17e-01 83.9% 53.6%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.72 56.0 4.74e-01 87.5% 51.1%
1st6A03 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.72 62.0 4.13e-01 100.0% 24.5%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 60.0 5.62e-01 100.0% 76.4%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 56.0 5.66e-01 87.5% 85.7%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 60.0 5.44e-01 98.2% 98.7%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 52.0 5.40e-01 80.4% 90.4%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.70 52.0 5.35e-01 91.1% 90.4%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.70 58.0 5.60e-01 96.4% 98.4%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.69 55.0 4.51e-01 91.1% 47.6%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.68 55.0 4.16e-01 100.0% 35.8%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.67 56.0 4.32e-01 100.0% 40.6%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.66 57.0 4.24e-01 100.0% 37.4%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.66 55.0 5.31e-01 100.0% 92.6%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 52.0 5.10e-01 85.7% 82.0%
4b7yD00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 54.0 4.60e-01 98.2% 71.1%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.63 51.0 3.80e-01 100.0% 33.1%
2jx4A01 6.10.140.460 Special › Helix non-globular › Helix Hairpins › 0.62 47.0 4.96e-01 91.1% 100.0%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.61 50.0 4.62e-01 100.0% 80.8%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 49.0 4.56e-01 96.4% 86.5%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.59 48.0 4.95e-01 89.3% 98.1%
1tf5A04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.58 53.0 3.62e-01 100.0% 75.3%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.56 37.0 3.65e-01 91.1% 62.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3384920 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.91 63.0 7.25e-01 71.4% 100.0%
3929097 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.88 80.0 6.00e-01 100.0% 43.1%
1108845 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.86 68.0 7.19e-01 92.9% 100.0%
4009476 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.85 76.0 6.92e-01 100.0% 76.0%
4201121 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.85 72.0 7.04e-01 100.0% 86.7%
4043979 3812.1.1.4 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › GrpE 0.85 68.0 6.70e-01 100.0% 81.7%
3690814 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.84 73.0 5.60e-01 100.0% 44.0%
3477418 4992.1.1.12 ↗ extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.83 75.0 6.26e-01 100.0% 61.1%
2485668 7025.1.1.2 ↗ alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9_C 0.82 74.0 6.42e-01 100.0% 71.4%
3413114 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.81 69.0 6.57e-01 100.0% 81.5%
3344575 9.26.1.0 ↗ beta barrels › Lipocalins/Streptavidin 0.81 67.0 4.59e-01 98.2% 26.7%
3575178 616.1.1.30 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Neur_chan_memb 0.81 72.0 6.51e-01 100.0% 74.7%
4059065 622.1.1.1 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.80 71.0 5.89e-01 100.0% 63.6%
5054469 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.80 72.0 5.82e-01 100.0% 62.9%
5002089 2004.1.1.144 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 0.80 70.0 4.32e-01 100.0% 17.1%
4129922 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.80 63.0 5.24e-01 100.0% 49.0%
3192846 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 72.0 5.49e-01 100.0% 46.4%
4957831 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.80 72.0 5.06e-01 100.0% 37.6%
3271624 2004.1.1.184 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.80 70.0 4.10e-01 100.0% 12.6%
3839497 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.79 65.0 5.73e-01 100.0% 61.2%
3483986 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 70.0 5.88e-01 100.0% 65.3%
4798159 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.79 65.0 5.94e-01 100.0% 68.4%
5057549 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 68.0 5.34e-01 96.4% 51.7%
3641527 192.8.1.353 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med10 0.79 64.0 5.63e-01 100.0% 61.3%
4474737 3711.1.1.44 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Med11 0.78 68.0 5.88e-01 100.0% 70.0%
4652719 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.78 68.0 5.77e-01 100.0% 68.4%
3382610 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.77 68.0 4.31e-01 100.0% 20.4%
3611632 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.77 67.0 5.61e-01 100.0% 59.0%
315449 192.8.1.2 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Hanta_nucleocap 0.77 69.0 6.25e-01 100.0% 88.2%
4051951 605.2.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.77 66.0 5.54e-01 92.9% 94.4%
4116112 192.8.1.353 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med10 0.77 67.0 5.98e-01 98.2% 75.0%
3163896 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 62.0 4.18e-01 100.0% 24.3%
3491418 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.76 61.0 5.57e-01 89.3% 100.0%
3167298 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.74 64.0 5.27e-01 100.0% 61.9%
3763555 109.4.1.1505 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_FBXO47 0.73 62.0 4.26e-01 100.0% 26.7%
3470544 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.73 62.0 5.34e-01 100.0% 70.5%
4216245 4082.1.1.1 ↗ alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange 0.72 53.0 5.64e-01 80.4% 100.0%
3487862 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.72 62.0 4.12e-01 100.0% 27.5%
3976071 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.72 58.0 4.90e-01 87.5% 55.6%
3996388 4146.1.1.11 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › Bestrophin 0.71 50.0 4.93e-01 76.8% 70.0%
3961296 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.68 58.0 4.85e-01 92.9% 57.4%
4126383 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.68 55.0 4.17e-01 100.0% 35.5%
2323907 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.67 57.0 3.86e-01 100.0% 26.4%
1032114 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.66 52.0 5.10e-01 85.7% 82.0%
3570117 375.6.1.2 ↗ few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 0.64 55.0 5.44e-01 98.2% 88.3%
4026 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.63 55.0 4.69e-01 100.0% 62.8%
5007583 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.58 49.0 3.22e-01 92.9% 23.0%
185993 6026.1.1.1 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.58 47.0 4.63e-01 89.3% 83.6%