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NC_021798.1__YP_008241605.1__Phi17-2_gp110__00110

Bact-Vir

NC_021798.1__YP_008241605.1__Phi17-2_gp110__00110

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-83
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 54.0 6.37e-01 79.2% 100.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 53.0 6.16e-01 79.2% 98.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 58.0 6.22e-01 83.3% 88.9%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 55.0 6.03e-01 81.9% 91.5%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 57.0 5.81e-01 87.5% 80.3%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.76 61.0 5.44e-01 84.7% 72.2%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.44e-01 87.5% 92.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 6.15e-01 87.5% 100.0%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 51.0 5.88e-01 81.9% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 5.88e-01 94.4% 83.6%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.64e-01 84.7% 90.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.72 59.0 4.22e-01 90.3% 34.3%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.31e-01 94.4% 75.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 5.34e-01 79.2% 98.5%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 52.0 4.60e-01 81.9% 76.0%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.67 51.0 4.41e-01 81.9% 56.2%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.39e-01 88.9% 98.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.57e-01 88.9% 100.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.64 53.0 4.69e-01 90.3% 72.1%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 48.0 3.76e-01 81.9% 82.1%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 47.0 3.51e-01 80.6% 33.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.72e-01 84.7% 79.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 5.39e-01 87.5% 100.0%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 46.0 3.81e-01 77.8% 96.8%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 53.0 3.99e-01 98.6% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.92e-01 88.9% 97.0%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 46.0 2.98e-01 84.7% 34.7%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 3.94e-01 94.4% 94.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.61e-01 90.3% 96.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.63e-01 90.3% 97.1%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 45.0 3.18e-01 93.1% 94.9%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 43.0 4.00e-01 84.7% 97.9%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.55 45.0 3.73e-01 94.4% 94.4%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.74e-01 90.3% 79.5%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 38.0 2.51e-01 80.6% 16.8%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.55 38.0 3.18e-01 73.6% 57.8%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 38.0 3.08e-01 73.6% 49.7%
4hg1A00 3.40.1580.30 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Domain of unknown function (DUF5066) 0.53 38.0 2.74e-01 75.0% 39.6%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.53 45.0 3.24e-01 97.2% 42.2%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.48e-01 98.6% 93.9%
3ewaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.58e-01 75.0% 83.5%
2mouA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.18e-01 100.0% 69.5%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 34.0 3.81e-01 72.2% 100.0%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.51 40.0 3.40e-01 93.1% 97.1%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 39.0 3.43e-01 86.1% 78.1%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 39.0 2.64e-01 83.3% 43.1%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 38.0 2.59e-01 84.7% 34.0%
2w02B02 2.30.30.1240 Mainly Beta › Roll › SH3 type barrels. › AscD, thumb domain, four stranded beta-sheet 0.50 35.0 3.63e-01 75.0% 97.1%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.82 60.0 6.76e-01 86.1% 100.0%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.81 58.0 6.58e-01 83.3% 100.0%
3740753 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.80 54.0 5.70e-01 79.2% 76.9%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.80 59.0 4.42e-01 86.1% 33.9%
4078120 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.79 57.0 6.45e-01 77.8% 100.0%
3781710 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.78 59.0 5.75e-01 83.3% 72.5%
3660922 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.78 56.0 5.87e-01 83.3% 83.1%
3821919 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.77 56.0 6.05e-01 86.1% 91.7%
3937194 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.75 59.0 6.18e-01 87.5% 92.3%
4881976 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 54.0 5.42e-01 88.9% 74.3%
1167052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.53e-01 87.5% 89.7%
3703932 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 6.20e-01 84.7% 100.0%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.73 60.0 5.34e-01 88.9% 73.7%
3645395 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 58.0 5.59e-01 84.7% 100.0%
1548913 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.73 60.0 4.58e-01 90.3% 46.3%
3669492 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 62.0 4.93e-01 93.1% 83.6%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.32e-01 94.4% 72.2%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 59.0 5.63e-01 90.3% 90.6%
3598283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 4.97e-01 91.7% 63.8%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 4.85e-01 75.0% 100.0%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.42e-01 90.3% 72.9%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 60.0 5.81e-01 90.3% 87.5%
3517030 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.71 60.0 5.96e-01 90.3% 100.0%
1436138 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.71 59.0 4.55e-01 90.3% 47.5%
4398865 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 51.0 4.61e-01 75.0% 86.3%
4196537 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.70 56.0 5.58e-01 86.1% 90.7%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 63.0 4.83e-01 98.6% 67.7%
3296865 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.69 55.0 4.82e-01 91.7% 58.1%
2831853 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.68 61.0 4.65e-01 97.2% 66.0%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 56.0 5.43e-01 90.3% 87.5%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 56.0 5.24e-01 98.6% 73.3%
1527468 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 56.0 4.83e-01 90.3% 59.5%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 55.0 4.31e-01 90.3% 99.3%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.88e-01 87.5% 71.6%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 53.0 4.79e-01 87.5% 65.0%
3819397 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 50.0 4.84e-01 81.9% 78.8%
4110324 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.65 54.0 5.24e-01 90.3% 100.0%
3936468 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.06e-01 98.6% 72.0%
3363058 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.64 45.0 3.24e-01 75.0% 37.3%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 52.0 5.44e-01 88.9% 100.0%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 52.0 5.46e-01 90.3% 98.5%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.28e-01 93.1% 98.7%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 52.0 5.40e-01 88.9% 100.0%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 52.0 5.40e-01 88.9% 98.5%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 49.0 5.16e-01 87.5% 98.5%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 49.0 4.81e-01 88.9% 85.0%
1815428 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.62 47.0 4.33e-01 81.9% 83.2%
4484974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 5.10e-01 97.2% 94.1%
4000737 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.61 49.0 4.20e-01 93.1% 96.2%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 48.0 5.05e-01 88.9% 100.0%
2106291 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.61 49.0 4.05e-01 90.3% 56.0%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 48.0 4.98e-01 88.9% 100.0%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 48.0 4.94e-01 88.9% 100.0%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 47.0 4.92e-01 88.9% 97.0%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 46.0 4.83e-01 87.5% 100.0%
4863266 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.59 47.0 4.90e-01 100.0% 100.0%
3174293 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.58 48.0 3.58e-01 91.7% 40.8%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.56 39.0 3.14e-01 73.6% 91.3%
3749631 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.55 49.0 4.32e-01 97.2% 75.2%
3396057 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 38.0 3.74e-01 83.3% 67.5%
4157830 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.52 38.0 2.57e-01 76.4% 83.8%
4242808 101.1.8.6 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat 0.52 44.0 3.82e-01 98.6% 60.8%
None — 0.52 37.0 2.55e-01 76.4% 83.8%
5048036 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.51 37.0 2.57e-01 76.4% 78.5%
3740289 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 42.0 2.89e-01 93.1% 73.7%
5023029 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.51 36.0 2.56e-01 76.4% 80.0%
3527733 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.51 42.0 3.14e-01 95.8% 58.5%
5035584 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.50 36.0 3.54e-01 86.1% 68.8%
4979224 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.50 36.0 2.52e-01 76.4% 80.4%