←Back to structures

NC_021798.1__YP_008241625.1__Phi17-2_gp130__00130

Bact-Vir

NC_021798.1__YP_008241625.1__Phi17-2_gp130__00130

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-69
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18824.7 best LPD11 97.5 5.40e-28 97.1% 98.6%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.82 54.0 6.14e-01 78.3% 90.4%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.70 62.0 5.37e-01 100.0% 80.7%
3ieeA02 1.20.58.820 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829 0.70 62.0 5.47e-01 100.0% 77.7%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.70 48.0 4.70e-01 73.9% 65.8%
3di2A00 1.20.1250.50 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.69 48.0 4.01e-01 72.5% 60.9%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.68 60.0 5.18e-01 100.0% 90.9%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.68 60.0 5.05e-01 100.0% 78.6%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 58.0 5.13e-01 98.6% 85.7%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.67 60.0 5.55e-01 100.0% 92.0%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 47.0 4.18e-01 73.9% 57.6%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 56.0 5.09e-01 100.0% 98.0%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.65 57.0 4.98e-01 100.0% 84.9%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 57.0 5.03e-01 100.0% 87.4%
3nrhA00 1.20.120.1550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Protein of unknown function DUF5063 0.64 57.0 4.38e-01 100.0% 93.0%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.63 55.0 5.15e-01 100.0% 87.4%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 55.0 4.90e-01 100.0% 89.2%
4k7bA00 1.20.120.1740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like 0.63 52.0 4.55e-01 100.0% 58.6%
2c2lA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 56.0 4.48e-01 98.6% 63.9%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.63 50.0 4.69e-01 95.7% 70.6%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.63 43.0 4.12e-01 72.5% 96.3%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.63 46.0 4.50e-01 97.1% 70.9%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.62 54.0 4.50e-01 100.0% 81.1%
1j1jA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.62 54.0 4.42e-01 100.0% 65.9%
3kfwX03 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 54.0 5.28e-01 100.0% 92.1%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.61 49.0 4.65e-01 98.6% 72.4%
2hsnA02 1.20.1050.110 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 48.0 4.23e-01 88.4% 57.0%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 50.0 4.43e-01 100.0% 70.5%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.59 53.0 5.06e-01 100.0% 94.9%
2wssW01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.59 43.0 3.91e-01 78.3% 94.7%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.58 43.0 3.97e-01 100.0% 61.8%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 47.0 4.15e-01 94.2% 83.5%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.57 48.0 3.49e-01 98.6% 41.3%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.56 45.0 4.59e-01 88.4% 95.5%
2ykgA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.56 45.0 3.77e-01 98.6% 48.1%
1n73D00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 37.0 3.43e-01 72.5% 82.2%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.54 44.0 3.85e-01 97.1% 66.1%
1avcA07 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.53 39.0 3.91e-01 92.8% 77.3%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.52 45.0 3.86e-01 95.7% 90.8%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.51 44.0 3.83e-01 98.6% 89.1%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 38.0 3.61e-01 78.3% 81.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4537668 1134.1.1.8 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › Use1 0.76 70.0 6.78e-01 100.0% 96.0%
3866248 4163.1.1.5 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Use1 0.75 68.0 6.77e-01 97.1% 100.0%
3711600 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.73 66.0 6.15e-01 100.0% 90.6%
3583102 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 66.0 6.32e-01 100.0% 95.0%
5047422 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 63.0 5.49e-01 100.0% 82.9%
1867183 603.1.1.8 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Spectrin_2 0.69 62.0 5.77e-01 100.0% 92.9%
3768254 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.68 60.0 5.43e-01 100.0% 82.1%
3479953 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.68 60.0 5.64e-01 100.0% 94.1%
3491815 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.68 59.0 5.38e-01 100.0% 88.3%
3595029 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 59.0 5.09e-01 100.0% 86.4%
3358888 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.67 59.0 5.09e-01 100.0% 65.5%
3927006 603.1.1.99 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.67 60.0 5.48e-01 100.0% 100.0%
3911608 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.67 59.0 5.46e-01 100.0% 85.6%
3504889 604.22.1.1 ↗ alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N 0.66 59.0 5.52e-01 100.0% 89.4%
3616671 604.1.1.155 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29142 0.66 58.0 5.27e-01 100.0% 77.9%
5022186 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.66 57.0 5.30e-01 100.0% 88.9%
5044306 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.66 58.0 4.20e-01 100.0% 48.7%
3815026 604.1.1.148 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TBCC_N 0.65 57.0 5.38e-01 100.0% 98.8%
1019379 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.65 57.0 4.99e-01 100.0% 95.2%
3526105 604.3.1.18 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27519 0.64 56.0 5.18e-01 100.0% 85.6%
3208696 109.4.1.2122 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C2 0.63 54.0 3.21e-01 100.0% 11.6%
3954514 604.5.1.61 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF30641 0.62 53.0 4.82e-01 100.0% 84.7%
3639718 109.4.1.862 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 0.62 54.0 3.17e-01 100.0% 11.5%
3952930 604.6.1.28 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › PF30641 0.62 53.0 4.76e-01 100.0% 82.0%
3742018 7094.1.1.2 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 0.61 39.0 3.58e-01 85.5% 48.4%
4019540 109.4.1.862 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 0.60 53.0 3.08e-01 100.0% 19.9%
3290723 601.1.1.85 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › PaaX_C 0.60 51.0 4.52e-01 100.0% 74.3%
4629012 627.1.1.1 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.58 47.0 3.87e-01 97.1% 53.1%
3469591 109.4.1.450 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.57 47.0 3.14e-01 97.1% 25.5%
3727711 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.57 45.0 3.05e-01 85.5% 86.0%
3589723 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 48.0 4.02e-01 98.6% 76.0%
3618872 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.55 46.0 3.29e-01 98.6% 41.3%
3193451 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.55 48.0 3.38e-01 100.0% 40.9%
3757569 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 44.0 3.81e-01 100.0% 85.4%
3931056 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.54 45.0 4.04e-01 100.0% 67.6%
3324007 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.53 37.0 3.42e-01 76.8% 65.0%
5060128 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 4.06e-01 81.2% 89.2%
4014527 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.51 44.0 3.95e-01 97.1% 85.3%