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NC_021798.1__YP_008241627.1__Phi17-2_gp132__00132

Bact-Vir

NC_021798.1__YP_008241627.1__Phi17-2_gp132__00132

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.66 42.0 3.54e-01 100.0% 38.8%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 39.0 4.37e-01 100.0% 78.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 42.0 4.16e-01 100.0% 66.2%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 43.0 3.40e-01 100.0% 35.7%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.61 37.0 3.60e-01 100.0% 55.1%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 41.0 4.31e-01 100.0% 82.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 38.0 3.92e-01 100.0% 70.0%
1yg9A01 2.60.40.1960 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 33.0 3.16e-01 100.0% 47.3%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 51.0 3.18e-01 100.0% 97.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 38.0 3.97e-01 100.0% 72.9%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 50.0 3.30e-01 98.4% 100.0%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.58 40.0 3.11e-01 100.0% 33.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 3.56e-01 100.0% 54.4%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 37.0 3.25e-01 100.0% 45.6%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.57 50.0 3.91e-01 100.0% 89.4%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 50.0 3.33e-01 100.0% 96.5%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 48.0 3.13e-01 100.0% 99.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.25e-01 81.0% 50.0%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.01e-01 100.0% 99.7%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.11e-01 100.0% 85.0%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.54 48.0 4.39e-01 100.0% 84.3%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.52e-01 81.0% 93.5%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 3.70e-01 100.0% 89.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 30.0 2.94e-01 100.0% 46.4%
4mbrA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.47e-01 100.0% 65.3%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.62e-01 100.0% 81.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 39.0 3.79e-01 92.1% 73.6%
4ckbA01 3.30.470.140 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.50 39.0 2.85e-01 85.7% 87.1%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 2.92e-01 81.0% 38.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.65 45.0 4.41e-01 100.0% 65.7%
3165077 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.64 44.0 4.31e-01 100.0% 65.7%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.63 44.0 4.51e-01 100.0% 76.7%
4966194 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.63 39.0 4.56e-01 100.0% 88.9%
3406803 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 40.0 3.88e-01 100.0% 60.0%
5075316 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.60 37.0 3.57e-01 100.0% 55.7%
3909317 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 39.0 4.21e-01 100.0% 86.0%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 37.0 3.51e-01 100.0% 52.5%
4528716 3784.1.1.0 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.57 44.0 3.68e-01 100.0% 49.5%
3791430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 3.99e-01 100.0% 80.0%
978 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 48.0 3.83e-01 100.0% 59.4%
3403399 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 47.0 3.97e-01 100.0% 83.5%
4447285 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.55 44.0 4.26e-01 100.0% 78.6%
1238059 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.55 47.0 3.06e-01 100.0% 99.1%
3898672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 36.0 3.65e-01 100.0% 67.7%
3466470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.74e-01 100.0% 68.5%
3264377 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 48.0 3.88e-01 100.0% 68.3%
3245986 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 44.0 3.09e-01 96.8% 37.4%
3699577 220.1.1.236 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_27 0.53 46.0 3.89e-01 100.0% 64.5%
3935052 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.53 45.0 3.65e-01 100.0% 71.5%
3523446 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.52 45.0 3.91e-01 100.0% 76.0%
4680137 220.1.1.154 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.52 45.0 3.41e-01 100.0% 44.4%
3993001 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 3.44e-01 100.0% 58.7%
3995389 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.52 45.0 3.51e-01 100.0% 60.0%
4303134 220.1.1.191 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 0.52 45.0 3.43e-01 100.0% 65.2%
3713703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.71e-01 100.0% 67.0%
3223257 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.51 42.0 3.58e-01 100.0% 76.7%
3476139 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 45.0 3.72e-01 100.0% 57.4%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.71e-01 100.0% 71.8%
4013462 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 39.0 2.55e-01 100.0% 18.3%
3718060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.57e-01 100.0% 71.3%
3786604 220.1.1.244 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31261 0.50 43.0 3.54e-01 100.0% 52.8%
D2 high residues 68-118
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ceiA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.65 47.0 4.41e-01 82.4% 63.5%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.56 39.0 3.53e-01 74.5% 50.0%