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NC_021798.1__YP_008241639.1__Phi17-2_gp144__00144

Bact-Vir

NC_021798.1__YP_008241639.1__Phi17-2_gp144__00144

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-87
PDB
Domain cluster: rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_100001560__D76-126
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zh9B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.78 62.0 5.69e-01 100.0% 67.1%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.76 59.0 5.30e-01 100.0% 60.3%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.76 60.0 5.28e-01 100.0% 59.0%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.75 64.0 6.30e-01 96.4% 93.1%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.75 55.0 4.11e-01 78.2% 52.7%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.75 59.0 5.21e-01 100.0% 59.0%
4ex6A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 50.0 4.70e-01 96.4% 59.7%
1m45A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.72 56.0 5.30e-01 98.2% 70.1%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.72 53.0 5.54e-01 87.3% 91.7%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.72 60.0 5.80e-01 100.0% 83.6%
2v6zM00 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.72 59.0 5.36e-01 100.0% 68.0%
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.71 58.0 5.26e-01 94.5% 74.7%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 51.0 4.83e-01 100.0% 63.6%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 47.0 4.51e-01 89.1% 59.4%
3iruA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 52.0 4.64e-01 100.0% 56.4%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 59.0 5.18e-01 100.0% 67.0%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.70 56.0 4.29e-01 96.4% 58.6%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 51.0 3.81e-01 80.0% 50.0%
1rdfA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 51.0 4.56e-01 100.0% 56.4%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.69 59.0 4.26e-01 100.0% 93.9%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 45.0 4.38e-01 94.5% 59.4%
3k1zA02 1.10.150.720 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase 0.68 55.0 4.90e-01 94.5% 77.4%
1jqjD03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 59.0 5.11e-01 98.2% 64.0%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 47.0 4.45e-01 100.0% 60.0%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.66 46.0 3.34e-01 72.7% 26.4%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 45.0 4.28e-01 94.5% 59.7%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 53.0 4.73e-01 94.5% 61.0%
2zg6A02 1.10.150.660 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.66 53.0 4.90e-01 90.9% 70.8%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 49.0 4.48e-01 96.4% 60.8%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 55.0 5.07e-01 98.2% 88.9%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.63 52.0 4.73e-01 96.4% 81.8%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 54.0 4.39e-01 94.5% 62.7%
6p10B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 54.0 4.60e-01 98.2% 79.1%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 47.0 4.01e-01 87.3% 56.1%
2fdrA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 43.0 4.12e-01 94.5% 62.7%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 47.0 3.58e-01 89.1% 35.1%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.61 51.0 4.18e-01 100.0% 50.0%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.60 47.0 4.40e-01 89.1% 70.4%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 42.0 4.40e-01 98.2% 93.5%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.56e-01 81.8% 56.2%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 41.0 3.19e-01 74.5% 35.8%
3fynA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 50.0 3.73e-01 100.0% 84.2%
3cl3A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 41.0 3.57e-01 72.7% 59.5%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.58 40.0 3.53e-01 72.7% 94.2%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 51.0 3.87e-01 100.0% 43.3%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.57 45.0 4.22e-01 94.5% 69.4%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 41.0 4.19e-01 100.0% 81.5%
3v76A03 1.10.8.260 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like 0.57 42.0 4.10e-01 92.7% 73.8%
1iv8A04 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.56 45.0 3.88e-01 100.0% 54.6%
2f76X00 1.10.150.490 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Retroviral GAG p10 protein 0.55 46.0 3.92e-01 100.0% 71.0%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.29e-01 98.2% 96.8%
1pujA02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.55 40.0 3.51e-01 81.8% 73.1%
6rftA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 42.0 3.32e-01 92.7% 76.3%
3cexA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.52 40.0 2.93e-01 87.3% 90.6%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.52 40.0 4.09e-01 100.0% 92.5%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.00e-01 80.0% 36.1%
6i2mB02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 36.0 2.95e-01 74.5% 36.9%
3gmfA02 1.10.40.110 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.52 42.0 3.51e-01 94.5% 68.9%
2vvlA02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.50 39.0 2.66e-01 85.5% 22.5%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977168 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.87 71.0 6.41e-01 96.4% 65.3%
5067754 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 66.0 6.66e-01 100.0% 92.7%
4341780 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.78 64.0 6.10e-01 100.0% 78.5%
4576669 148.1.3.49 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.78 64.0 5.66e-01 100.0% 62.5%
4119015 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 64.0 6.31e-01 100.0% 86.7%
4446481 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 67.0 5.21e-01 100.0% 47.2%
1346828 103.5.1.3 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › IPMS_D2 0.77 63.0 5.21e-01 92.7% 50.5%
5030767 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.76 70.0 6.77e-01 100.0% 93.3%
4167763 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.76 59.0 3.50e-01 92.7% 11.9%
5025288 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.75 49.0 3.27e-01 94.5% 17.8%
5080558 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.75 60.0 6.21e-01 89.1% 98.0%
4038157 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.75 61.0 6.34e-01 96.4% 100.0%
3296177 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.74 58.0 5.12e-01 90.9% 58.7%
4120356 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.74 61.0 5.04e-01 100.0% 51.0%
5009203 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 60.0 5.85e-01 100.0% 81.7%
4952657 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.74 61.0 5.94e-01 98.2% 85.0%
4110273 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.74 62.0 3.71e-01 98.2% 12.9%
4948461 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.74 58.0 6.07e-01 96.4% 100.0%
4942992 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.74 60.0 6.19e-01 96.4% 100.0%
4971005 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.73 61.0 4.00e-01 94.5% 25.6%
3928496 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.73 60.0 5.83e-01 96.4% 83.3%
4949524 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.73 60.0 6.02e-01 98.2% 90.9%
4299866 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.73 56.0 5.51e-01 92.7% 78.3%
None — 0.73 57.0 3.41e-01 94.5% 12.6%
4959812 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.73 63.0 5.05e-01 98.2% 50.0%
3412847 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 54.0 5.61e-01 89.1% 90.0%
3398102 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.73 64.0 5.62e-01 100.0% 67.5%
3554590 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.72 64.0 5.64e-01 98.2% 73.8%
4251437 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.72 60.0 3.58e-01 98.2% 13.4%
None — 0.72 56.0 3.28e-01 89.1% 10.2%
4453145 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.72 56.0 5.63e-01 94.5% 87.3%
3631122 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.72 57.0 5.86e-01 96.4% 100.0%
4955456 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.71 57.0 3.81e-01 94.5% 22.2%
5022861 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.71 59.0 5.58e-01 100.0% 78.6%
5010950 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 57.0 5.29e-01 98.2% 70.0%
4960805 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.71 58.0 5.69e-01 98.2% 85.0%
4555788 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.71 53.0 5.37e-01 90.9% 83.6%
3810390 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.71 63.0 5.26e-01 100.0% 59.6%
3886434 108.1.1.123 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_EFHB_C 0.71 59.0 5.32e-01 96.4% 68.0%
3700855 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.71 60.0 5.42e-01 100.0% 69.3%
4928737 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.70 59.0 4.96e-01 94.5% 65.3%
3314414 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.70 62.0 5.31e-01 100.0% 62.2%
3934535 103.11.1.0 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related 0.70 58.0 5.73e-01 100.0% 88.3%
3444967 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.70 62.0 4.96e-01 100.0% 50.9%
4948317 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.70 56.0 5.79e-01 90.9% 100.0%
3584823 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 61.0 4.78e-01 100.0% 46.7%
4984693 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.70 55.0 5.71e-01 92.7% 98.0%
3574816 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.70 56.0 3.74e-01 94.5% 26.2%
3646179 4030.1.1.20 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Ovate 0.70 44.0 4.49e-01 72.7% 65.5%
4953164 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.69 56.0 5.65e-01 98.2% 90.9%
5072245 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.69 59.0 5.90e-01 100.0% 98.2%
4973086 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.69 57.0 5.77e-01 100.0% 96.4%
3799630 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.69 55.0 3.70e-01 94.5% 25.8%
4961196 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.68 56.0 3.64e-01 92.7% 23.2%
5037154 4953.1.1.39 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › LPG_synthase_TM 0.68 60.0 5.22e-01 100.0% 70.6%
3831850 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 58.0 3.40e-01 100.0% 11.2%
3541829 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 4.50e-01 94.5% 51.8%
4201756 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 54.0 5.44e-01 92.7% 94.5%
3633346 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 58.0 4.96e-01 100.0% 63.3%
3450546 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 45.0 3.52e-01 70.9% 72.9%
3659978 101.1.1.138 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.66 45.0 3.72e-01 70.9% 80.0%
3617871 108.1.1.147 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_10 0.66 54.0 4.98e-01 94.5% 69.3%
5023530 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.65 55.0 5.38e-01 100.0% 95.0%
4001630 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.65 54.0 4.15e-01 89.1% 52.2%
5019927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 3.72e-01 70.9% 86.7%
4990055 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 50.0 5.04e-01 100.0% 89.1%
4108698 103.1.1.83 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF2603 0.64 54.0 5.05e-01 98.2% 81.4%
3737618 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.64 51.0 4.07e-01 96.4% 40.3%
4640273 142.1.1.33 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › DUF2603 0.64 53.0 4.89e-01 98.2% 76.0%
3577433 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.63 54.0 4.13e-01 92.7% 51.7%
4203362 181.1.1.15 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PF29197 0.63 54.0 5.43e-01 96.4% 98.2%
None — 0.63 53.0 3.99e-01 92.7% 45.2%
1170699 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.63 53.0 3.66e-01 96.4% 80.2%
3913563 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 48.0 4.23e-01 87.3% 56.5%
3482403 101.11.1.8 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › UBN_AB 0.62 43.0 4.06e-01 74.5% 62.9%
1124196 3788.1.1.1 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR 0.62 47.0 4.01e-01 87.3% 56.1%
3584520 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 43.0 3.49e-01 76.4% 66.4%
3590722 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.60 52.0 4.21e-01 100.0% 77.3%
3269970 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.60 47.0 4.04e-01 96.4% 70.5%
3840698 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.60 47.0 3.93e-01 89.1% 63.0%
4992168 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 48.0 4.21e-01 98.2% 70.0%
5060128 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 39.0 3.72e-01 72.7% 61.5%
5012802 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.62e-01 94.5% 82.1%
D2 medium residues 144-182
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.70 55.0 5.05e-01 100.0% 67.3%
4pcwC00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 53.0 4.20e-01 97.4% 48.4%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.63 51.0 3.77e-01 100.0% 32.5%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.62 51.0 3.24e-01 97.4% 18.9%
2i10A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 43.0 3.75e-01 76.9% 51.7%
5hmlA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 45.0 3.69e-01 92.3% 47.5%
5ktaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 38.0 2.69e-01 100.0% 23.6%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.51 44.0 3.19e-01 97.4% 81.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741362 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.79 67.0 4.13e-01 100.0% 63.5%
3839514 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.70 58.0 4.13e-01 100.0% 33.1%
3609534 108.1.1.30 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.66 49.0 3.88e-01 94.9% 35.8%
5056679 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.66 50.0 3.48e-01 94.9% 27.4%
3783649 101.1.1.228 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Eaf7 0.65 54.0 4.56e-01 97.4% 57.1%
5063799 3355.1.1.8 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_H_antiporter 0.65 53.0 2.99e-01 97.4% 61.3%
3268812 108.1.1.34 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_12 0.65 50.0 4.06e-01 97.4% 100.0%
4976386 2007.1.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Oxidored_q6 0.64 53.0 3.32e-01 100.0% 20.9%
4167236 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.63 50.0 2.87e-01 97.4% 61.8%
5044344 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 49.0 3.36e-01 97.4% 24.8%
5013995 148.1.3.17 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.62 52.0 4.13e-01 100.0% 45.9%
3258379 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.61 46.0 2.62e-01 87.2% 15.1%
3925228 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.61 43.0 3.79e-01 92.3% 47.7%
3934535 103.11.1.0 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related 0.60 45.0 4.15e-01 100.0% 61.7%
4471340 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.60 44.0 2.43e-01 82.1% 11.7%
3468055 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.59 48.0 3.54e-01 100.0% 80.8%
3260092 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.56 42.0 3.52e-01 94.9% 44.3%
3927575 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.54 44.0 3.89e-01 94.9% 76.7%
3937985 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 39.0 3.64e-01 92.3% 76.4%