Back to structures

NC_021798.1__YP_008241641.1__Phi17-2_gp146__00146

Bact-Vir

NC_021798.1__YP_008241641.1__Phi17-2_gp146__00146

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-100
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 48.0 4.17e-01 83.5% 51.4%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.65 55.0 4.75e-01 92.8% 81.3%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.64 46.0 3.25e-01 74.2% 62.5%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.63 55.0 4.75e-01 95.9% 77.2%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.62 54.0 4.52e-01 95.9% 66.9%
6xmtA02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.62 51.0 4.26e-01 89.7% 79.8%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.61 52.0 4.59e-01 92.8% 78.6%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 43.0 3.78e-01 85.6% 49.0%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 49.0 4.62e-01 89.7% 94.1%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 47.0 3.86e-01 85.6% 83.0%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 47.0 4.03e-01 84.5% 96.8%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.59 37.0 4.40e-01 95.9% 96.8%
1attA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 47.0 4.13e-01 85.6% 98.6%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.57 38.0 3.96e-01 89.7% 74.2%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.57 45.0 4.86e-01 86.6% 100.0%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.85e-01 78.4% 87.6%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.82e-01 80.4% 84.2%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.90e-01 100.0% 60.7%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.55 49.0 3.50e-01 100.0% 84.4%
1zhxA03 2.40.160.120 Mainly Beta › Beta Barrel › Porin › 0.55 45.0 3.66e-01 90.7% 55.0%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 49.0 4.49e-01 100.0% 87.6%
2xn2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 38.0 3.83e-01 71.1% 99.0%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.54 44.0 3.70e-01 88.7% 93.5%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 39.0 3.24e-01 76.3% 54.2%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.55e-01 79.4% 87.9%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 42.0 3.67e-01 85.6% 55.6%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.53 48.0 3.57e-01 100.0% 62.5%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.53 46.0 4.25e-01 100.0% 91.7%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 46.0 4.34e-01 97.9% 91.9%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 47.0 3.43e-01 100.0% 89.4%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.62e-01 78.4% 89.8%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.67e-01 83.5% 95.7%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.57e-01 79.4% 91.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.81e-01 97.9% 91.3%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.52 42.0 3.71e-01 95.9% 60.0%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.56e-01 92.8% 64.5%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.51e-01 92.8% 66.9%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.41e-01 87.6% 75.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228525 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.68 61.0 5.92e-01 100.0% 90.0%
3689503 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.66 46.0 4.29e-01 72.2% 77.5%
4954368 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.66 56.0 4.96e-01 92.8% 68.6%
4134185 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.65 55.0 4.92e-01 92.8% 78.4%
4408843 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.65 57.0 4.99e-01 95.9% 75.9%
3281179 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.65 56.0 4.98e-01 92.8% 76.3%
5079230 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 56.0 5.44e-01 100.0% 85.7%
4983936 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.65 55.0 4.93e-01 92.8% 77.0%
4138593 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.64 55.0 4.91e-01 92.8% 76.3%
4999620 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.64 56.0 5.11e-01 95.9% 77.7%
4965152 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.64 55.0 4.97e-01 92.8% 72.9%
3286735 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.64 41.0 4.43e-01 78.4% 75.3%
5047928 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.64 51.0 4.77e-01 93.8% 68.3%
4928898 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 39.0 4.35e-01 77.3% 78.7%
3590483 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.64 55.0 5.03e-01 95.9% 82.3%
5047424 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.63 51.0 4.72e-01 94.8% 68.3%
4139532 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.63 55.0 4.95e-01 95.9% 77.0%
2524073 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.63 52.0 4.99e-01 89.7% 83.0%
4124708 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.62 55.0 4.58e-01 95.9% 59.8%
4571190 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.62 54.0 4.81e-01 95.9% 77.0%
3096198 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.62 52.0 5.03e-01 89.7% 83.3%
4950072 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.62 54.0 5.00e-01 95.9% 80.8%
3262636 883.1.1.7 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › MMM1 0.62 51.0 4.05e-01 89.7% 71.9%
4266402 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.62 54.0 4.95e-01 95.9% 79.2%
3547737 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.61 49.0 3.28e-01 86.6% 53.3%
4997289 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.61 52.0 4.82e-01 92.8% 73.2%
3769924 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.60 49.0 4.41e-01 86.6% 78.5%
2769983 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.60 49.0 4.38e-01 89.7% 70.0%
4929327 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 38.0 3.99e-01 77.3% 70.0%
3436853 5.1.3.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.60 43.0 2.93e-01 77.3% 21.8%
3862288 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.58 49.0 3.26e-01 90.7% 54.1%
3176080 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 2.98e-01 85.6% 25.4%
3279504 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 47.0 4.05e-01 91.8% 91.5%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 43.0 2.79e-01 78.4% 32.3%
4203266 5.1.4.100 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.57 50.0 3.19e-01 97.9% 28.6%
3496817 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.57 50.0 4.28e-01 97.9% 78.1%
3323226 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 45.0 3.90e-01 84.5% 62.7%
3182356 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 43.0 3.88e-01 80.4% 79.3%
3512045 292.2.1.8 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Herpes_UL52 0.56 48.0 4.17e-01 93.8% 90.7%
3606828 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 50.0 4.55e-01 100.0% 85.4%
3679340 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.56 49.0 4.73e-01 100.0% 95.5%
3251351 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 41.0 3.87e-01 79.4% 96.7%
3241172 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 41.0 3.88e-01 78.4% 92.2%
5046652 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.55 45.0 3.66e-01 88.7% 89.2%
5079458 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 44.0 2.89e-01 84.5% 28.5%
3943581 881.4.1.1 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.55 46.0 4.41e-01 90.7% 81.8%
4954762 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 50.0 4.57e-01 100.0% 86.4%
3728186 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 49.0 4.11e-01 100.0% 73.9%
3625821 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.55 47.0 3.42e-01 99.0% 92.5%
3167247 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.83e-01 83.5% 30.1%
6519 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.54 47.0 4.35e-01 96.9% 91.9%
4010371 295.1.1.45 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.54 37.0 3.81e-01 73.2% 98.9%
2466355 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.53 44.0 4.19e-01 93.8% 83.2%
3472281 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 41.0 3.22e-01 84.5% 97.3%
3725667 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 40.0 3.68e-01 80.4% 90.4%
4890223 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 44.0 3.09e-01 96.9% 79.5%
3169468 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.05e-01 100.0% 82.1%
3832530 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 3.09e-01 96.9% 92.4%
3867103 3417.1.1.1 a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.52 41.0 4.03e-01 84.5% 89.5%
3295586 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.52 42.0 3.59e-01 89.7% 97.0%
4943345 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 4.09e-01 89.7% 88.0%
3498477 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 42.0 2.94e-01 96.9% 70.3%