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NC_021798.1__YP_008241649.1__Phi17-2_gp154__00154
Bact-VirNC_021798.1__YP_008241649.1__Phi17-2_gp154__00154
Identity
- Accession:
- NC_021798 ↗
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Taxonomy
TaxID: 1327972
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-65
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 60.0 | 5.44e-01 | 87.3% | 90.2% |
| 2wadA01 | 6.20.70.10 | Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › | 0.73 | 34.0 | 4.38e-01 | 98.4% | 86.7% |
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.69 | 40.0 | 3.91e-01 | 100.0% | 54.4% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.69 | 55.0 | 4.96e-01 | 87.3% | 94.1% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.66 | 56.0 | 3.93e-01 | 100.0% | 83.3% |
| 5is2A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 54.0 | 4.79e-01 | 90.5% | 91.2% |
| 8adnN01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.65 | 54.0 | 3.99e-01 | 100.0% | 92.1% |
| 6m3aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 52.0 | 5.13e-01 | 100.0% | 83.3% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.65 | 54.0 | 4.69e-01 | 100.0% | 63.0% |
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.65 | 55.0 | 3.97e-01 | 100.0% | 89.4% |
| 1rypL00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.64 | 53.0 | 3.84e-01 | 100.0% | 85.4% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.63 | 54.0 | 3.89e-01 | 100.0% | 93.8% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.61 | 48.0 | 3.84e-01 | 100.0% | 42.1% |
| 3votB02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 41.0 | 2.64e-01 | 71.4% | 27.0% |
| 1eerC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 51.0 | 4.44e-01 | 100.0% | 61.9% |
| 3p1vA01 | 2.60.40.3250 | Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain | 0.59 | 53.0 | 4.10e-01 | 100.0% | 52.2% |
| 1ap8A00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.59 | 50.0 | 3.56e-01 | 100.0% | 47.9% |
| 1kutA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.58 | 39.0 | 3.18e-01 | 73.0% | 66.9% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 52.0 | 3.64e-01 | 100.0% | 41.9% |
| 3wnzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 51.0 | 3.87e-01 | 100.0% | 57.6% |
| 2olsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 39.0 | 3.03e-01 | 71.4% | 79.7% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 48.0 | 4.25e-01 | 100.0% | 100.0% |
| 4e4tA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 50.0 | 3.46e-01 | 100.0% | 41.1% |
| 2dbuB00 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.54 | 43.0 | 3.16e-01 | 90.5% | 93.2% |
| 5ixgA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.54 | 41.0 | 3.12e-01 | 85.7% | 92.3% |
| 3kcmF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 39.0 | 3.20e-01 | 85.7% | 56.5% |
| 5ijaA00 | 3.40.50.1450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like | 0.52 | 36.0 | 2.91e-01 | 76.2% | 95.9% |
| 2uvfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 3.75e-01 | 100.0% | 68.1% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.80e-01 | 100.0% | 61.5% |
| 6dgiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 47.0 | 3.53e-01 | 100.0% | 65.3% |
| 1edhA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.51 | 42.0 | 3.70e-01 | 100.0% | 61.6% |
| 1ehiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 43.0 | 3.39e-01 | 100.0% | 66.7% |
| 4hqsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 38.0 | 3.11e-01 | 87.3% | 54.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.68 | 50.0 | 5.31e-01 | 88.9% | 90.9% |
| 2579422 | 4326.1.1.1 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like › ER | 0.66 | 58.0 | 5.10e-01 | 98.4% | 80.9% |
| 4947559 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.66 | 54.0 | 4.83e-01 | 90.5% | 80.0% |
| 4998349 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.65 | 55.0 | 3.90e-01 | 95.2% | 85.6% |
| 3708226 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.64 | 53.0 | 3.70e-01 | 100.0% | 74.6% |
| 4977083 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.63 | 50.0 | 3.98e-01 | 100.0% | 41.5% |
| 4378815 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.63 | 54.0 | 4.82e-01 | 100.0% | 69.5% |
| 5070107 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.60 | 44.0 | 4.37e-01 | 82.5% | 100.0% |
| 3980369 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.60 | 49.0 | 4.20e-01 | 92.1% | 100.0% |
| 3675264 | 330.1.1.7 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsRBD2 | 0.59 | 41.0 | 2.94e-01 | 71.4% | 29.2% |
| 5075866 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 50.0 | 4.70e-01 | 98.4% | 100.0% |
| 4937741 | 210.1.3.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 | 0.57 | 37.0 | 2.66e-01 | 92.1% | 23.4% |
| 4673494 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.57 | 52.0 | 3.34e-01 | 100.0% | 29.2% |
| 4947584 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.56 | 39.0 | 2.68e-01 | 71.4% | 34.3% |
| 4663993 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.55 | 43.0 | 4.01e-01 | 90.5% | 83.5% |
| 3601845 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 3.21e-01 | 100.0% | 26.5% |
| 4137321 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.55 | 43.0 | 3.95e-01 | 88.9% | 78.8% |
| 4121483 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.55 | 47.0 | 2.97e-01 | 95.2% | 89.7% |
| 5039184 | 321.1.1.6 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase | 0.55 | 44.0 | 2.87e-01 | 100.0% | 88.9% |
| 4863223 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.54 | 44.0 | 3.39e-01 | 95.2% | 90.8% |
| 5058265 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.54 | 42.0 | 2.83e-01 | 87.3% | 23.8% |
| 5064343 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.53 | 37.0 | 2.93e-01 | 77.8% | 94.8% |
| 3169602 | 387.1.6.2 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Conotoxin Mo3964 › Sin3a_C | 0.52 | 42.0 | 2.93e-01 | 98.4% | 56.3% |
| 3239028 | 206.1.3.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C | 0.52 | 46.0 | 3.21e-01 | 100.0% | 38.0% |
| 3674092 | 2.1.1.68 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C | 0.52 | 43.0 | 3.30e-01 | 95.2% | 80.6% |
| 4931724 | 206.1.3.36 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA | 0.52 | 37.0 | 2.48e-01 | 79.4% | 35.3% |
| None | — | 0.51 | 43.0 | 3.25e-01 | 100.0% | 86.9% | |
| 3580419 | 3914.1.1.2 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer | 0.51 | 41.0 | 2.38e-01 | 98.4% | 78.4% |
| 4963591 | 3121.1.1.17 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › PF26502 | 0.50 | 42.0 | 4.04e-01 | 96.8% | 94.7% |
| 4405689 | 220.1.1.228 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PKH3_C | 0.50 | 42.0 | 3.28e-01 | 96.8% | 82.7% |