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NC_021798.1__YP_008241659.1__Phi17-2_gp164__00164
Bact-VirNC_021798.1__YP_008241659.1__Phi17-2_gp164__00164
Identity
- Accession:
- NC_021798 ↗
- Kingdom:
- phage
Quality
92.2
mean pLDDT
Taxonomy
TaxID: 1327972
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-23_69-238
Domain cluster:
rep: ORF9__YP_438136__Ovine_gammaherpesvirus_2__10398__D341-509
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10108.16 best | DNA_pol_B_exo2 | 56.0 | 6.30e-15 | 90.0% | 74.5% |
| PF13482.13 | RNase_H_2 | 39.2 | 9.90e-10 | 88.5% | 98.8% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gv9A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.85 | 74.0 | 6.95e-01 | 89.5% | 100.0% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.83 | 73.0 | 6.37e-01 | 91.6% | 81.9% |
| 4fvmA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.81 | 72.0 | 6.64e-01 | 91.6% | 100.0% |
| 2e6mA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.77 | 60.0 | 6.14e-01 | 92.1% | 82.8% |
| 2cntA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.75 | 28.0 | 3.19e-01 | 95.8% | 43.7% |
| 3dddA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.74 | 28.0 | 3.39e-01 | 95.8% | 51.5% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.74 | 35.0 | 5.03e-01 | 90.1% | 95.6% |
| 1y9wA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.74 | 28.0 | 3.79e-01 | 95.3% | 64.4% |
| 2g3aA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.72 | 28.0 | 3.73e-01 | 95.8% | 63.8% |
| 1x9mA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.71 | 61.0 | 5.73e-01 | 89.5% | 80.1% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 31.0 | 3.80e-01 | 94.2% | 87.4% |
| 4dkwA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 43.0 | 4.32e-01 | 91.1% | 82.5% |
| 3rn5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 19.0 | 2.64e-01 | 95.3% | 63.0% |
| 3rpjA00 | 3.30.310.230 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sigma factor-binding protein Crl monomer | 0.53 | 33.0 | 4.03e-01 | 100.0% | 95.2% |
| 3m4pA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 23.0 | 2.94e-01 | 95.8% | 67.0% |
| 6mptA01 | 3.30.420.590 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 34.0 | 3.67e-01 | 99.5% | 74.0% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028008 | 2484.1.1.132 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo2 | 0.87 | 77.0 | 7.82e-01 | 91.6% | 100.0% |
| 3965002 | 2484.1.1.132 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo2 | 0.86 | 80.0 | 7.04e-01 | 96.9% | 94.3% |
| 3385666 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.86 | 79.0 | 7.02e-01 | 95.8% | 91.5% |
| 5025208 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.85 | 76.0 | 7.06e-01 | 92.7% | 80.4% |
| 5081878 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.84 | 77.0 | 6.02e-01 | 94.2% | 84.7% |
| 1822623 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.83 | 74.0 | 6.44e-01 | 92.1% | 82.5% |
| 4982659 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.83 | 75.0 | 5.98e-01 | 94.2% | 89.4% |
| 5055213 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.83 | 72.0 | 7.31e-01 | 91.6% | 91.0% |
| 4953654 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.82 | 75.0 | 6.04e-01 | 94.8% | 71.8% |
| 4023334 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.82 | 73.0 | 6.28e-01 | 92.1% | 84.3% |
| 5050645 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.82 | 74.0 | 6.65e-01 | 93.7% | 77.6% |
| 5043498 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.82 | 75.0 | 5.73e-01 | 94.8% | 56.2% |
| 5056578 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.82 | 74.0 | 6.29e-01 | 94.8% | 70.5% |
| 5067181 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.81 | 74.0 | 5.57e-01 | 94.8% | 56.9% |
| 4500300 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.80 | 73.0 | 5.62e-01 | 94.8% | 58.4% |
| 4992857 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.80 | 71.0 | 6.88e-01 | 91.1% | 92.2% |
| 5072842 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.79 | 30.0 | 4.16e-01 | 97.4% | 68.0% |
| 5069164 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.78 | 29.0 | 3.37e-01 | 95.8% | 46.4% |
| 4997714 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.78 | 29.0 | 3.38e-01 | 95.8% | 45.9% |
| 4603831 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.77 | 63.0 | 5.71e-01 | 92.1% | 65.7% |
| 3397064 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.76 | 60.0 | 5.39e-01 | 92.1% | 61.2% |
| 3908305 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.76 | 61.0 | 5.94e-01 | 92.1% | 76.6% |
| 5046873 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.76 | 29.0 | 3.91e-01 | 95.8% | 64.8% |
| 4449996 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.74 | 27.0 | 3.50e-01 | 95.3% | 55.7% |
| 4677993 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.74 | 62.0 | 5.86e-01 | 92.7% | 75.0% |
| 1168767 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.74 | 64.0 | 6.16e-01 | 89.5% | 89.0% |
| 3406488 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.74 | 25.0 | 3.10e-01 | 97.4% | 46.2% |
| 2579558 | 2484.1.1.96 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_polI_exo1 | 0.72 | 57.0 | 5.60e-01 | 91.1% | 77.2% |
| 3283743 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.71 | 56.0 | 4.56e-01 | 91.1% | 46.6% |
| 4985396 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.69 | 27.0 | 3.65e-01 | 96.3% | 66.0% |
| 4990576 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.69 | 26.0 | 3.04e-01 | 96.3% | 45.5% |
| 4971004 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.69 | 26.0 | 3.59e-01 | 95.3% | 65.7% |
| 3601021 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 48.0 | 5.48e-01 | 95.3% | 94.5% |
| 4256383 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.67 | 48.0 | 5.42e-01 | 96.9% | 93.3% |
| 3700143 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.67 | 49.0 | 5.24e-01 | 96.9% | 84.7% |
| 3592626 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 49.0 | 5.36e-01 | 96.9% | 90.6% |
| 5042784 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 41.0 | 5.00e-01 | 90.1% | 96.7% |
| 3222918 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 47.0 | 5.27e-01 | 96.9% | 94.0% |
| 3184586 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 49.0 | 5.21e-01 | 96.9% | 89.4% |
| 3256010 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.64 | 49.0 | 5.21e-01 | 100.0% | 91.5% |
| 3264637 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 47.0 | 5.15e-01 | 96.3% | 92.9% |
| 3927362 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 47.0 | 5.18e-01 | 95.8% | 94.8% |
| 4024096 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 47.0 | 5.22e-01 | 96.9% | 94.8% |
| 3371308 | 213.1.1.51 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB_like | 0.63 | 26.0 | 2.66e-01 | 96.3% | 36.8% |
| 3733593 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 48.0 | 5.17e-01 | 96.9% | 92.1% |
| 3172513 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.61 | 47.0 | 4.94e-01 | 96.3% | 88.8% |
| 3408448 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 50.0 | 4.93e-01 | 96.3% | 81.5% |
| 3783530 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.60 | 45.0 | 4.96e-01 | 100.0% | 95.5% |
| 402817 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 28.0 | 3.70e-01 | 89.5% | 83.0% |
| 5073646 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 44.0 | 4.68e-01 | 92.1% | 90.9% |
| 3927894 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 31.0 | 3.63e-01 | 93.7% | 74.8% |
| 3478366 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 29.0 | 3.73e-01 | 91.1% | 89.5% |
| 4001973 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 35.0 | 4.15e-01 | 81.2% | 93.8% |
| 1718745 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.54 | 22.0 | 3.07e-01 | 99.0% | 73.4% |
| 4530661 | 3186.1.1.5 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › HpaP | 0.54 | 25.0 | 3.38e-01 | 99.5% | 86.7% |
| 5026800 | 2484.1.1.139 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 | 0.53 | 44.0 | 4.54e-01 | 92.1% | 92.2% |
| 3250605 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 30.0 | 3.61e-01 | 94.2% | 84.0% |
| 4933539 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.52 | 47.0 | 4.53e-01 | 97.4% | 97.7% |
| 4936812 | 2484.1.1.49 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N | 0.52 | 34.0 | 4.02e-01 | 93.2% | 99.2% |
| 4661838 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.51 | 46.0 | 4.65e-01 | 97.9% | 96.8% |
D2
high
residues 253-325
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.63 | 54.0 | 4.96e-01 | 100.0% | 77.0% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.61 | 46.0 | 4.35e-01 | 93.2% | 66.3% |
| 2v6eA01 | 1.10.287.3180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 51.0 | 5.06e-01 | 93.2% | 94.7% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 52.0 | 4.25e-01 | 100.0% | 52.3% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 47.0 | 4.47e-01 | 89.0% | 71.8% |
| 1i17A00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.60 | 52.0 | 4.68e-01 | 100.0% | 85.0% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 51.0 | 4.21e-01 | 100.0% | 54.2% |
| 1dlwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 52.0 | 4.51e-01 | 100.0% | 62.9% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.59 | 51.0 | 4.51e-01 | 100.0% | 94.7% |
| 8hk0A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.59 | 47.0 | 4.08e-01 | 89.0% | 60.5% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 37.0 | 3.49e-01 | 74.0% | 54.0% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 51.0 | 4.27e-01 | 100.0% | 67.7% |
| 2n3eA01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.57 | 49.0 | 4.28e-01 | 100.0% | 68.7% |
| 2lyiA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.55 | 49.0 | 3.91e-01 | 100.0% | 93.9% |
| 7drjB01 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.55 | 45.0 | 3.48e-01 | 94.5% | 78.1% |
| 4tvsA00 | 3.40.50.12190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 44.0 | 3.28e-01 | 100.0% | 66.1% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.53 | 37.0 | 3.18e-01 | 74.0% | 49.6% |
| 1wnvB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.52 | 41.0 | 3.08e-01 | 90.4% | 62.9% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.74e-01 | 93.2% | 84.2% |
| 2ieqA00 | 1.20.5.300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 37.0 | 3.50e-01 | 78.1% | 72.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4585740 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.67 | 55.0 | 5.15e-01 | 90.4% | 82.2% |
| 3575378 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 53.0 | 4.91e-01 | 94.5% | 68.4% |
| 3790618 | 621.1.1.1 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C | 0.65 | 53.0 | 4.71e-01 | 90.4% | 70.5% |
| 4955590 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.64 | 56.0 | 4.31e-01 | 100.0% | 78.9% |
| 5072210 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.63 | 43.0 | 4.06e-01 | 97.3% | 60.0% |
| 5078040 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.62 | 49.0 | 4.76e-01 | 90.4% | 85.9% |
| 3935192 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.61 | 45.0 | 4.54e-01 | 94.5% | 77.3% |
| 4038757 | 604.39.1.2 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › BioY | 0.61 | 52.0 | 4.00e-01 | 100.0% | 85.6% |
| 3211461 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 50.0 | 3.97e-01 | 100.0% | 94.1% |
| 2670445 | 191.1.1.47 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_45 | 0.58 | 47.0 | 4.48e-01 | 97.3% | 93.5% |
| 5043009 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.56 | 45.0 | 2.78e-01 | 94.5% | 13.5% |
| 3413518 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.56 | 39.0 | 3.94e-01 | 94.5% | 73.3% |
| 3796461 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 41.0 | 4.08e-01 | 97.3% | 85.3% |
| 3195939 | 230.1.1.0 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like | 0.52 | 41.0 | 3.23e-01 | 89.0% | 81.2% |
| 3263507 | 3409.1.1.3 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 | 0.52 | 43.0 | 3.48e-01 | 94.5% | 85.3% |