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NC_021798.1__YP_008241666.1__Phi17-2_gp171__00171

Bact-Vir

NC_021798.1__YP_008241666.1__Phi17-2_gp171__00171

Identity

Accession:
NC_021798 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lightbulbvirus› Cellulophaga_phage_phi17:2

TaxID: 1327972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-193
PDB
Domain cluster: rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00271__D25-165
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.86 65.0 7.28e-01 95.8% 96.3%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.82 71.0 7.46e-01 95.2% 96.8%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.80 74.0 7.35e-01 95.8% 95.9%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.78 55.0 5.80e-01 80.4% 79.6%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.77 52.0 6.05e-01 94.0% 95.0%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.76 63.0 6.73e-01 95.8% 98.6%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.74 53.0 5.53e-01 80.4% 79.0%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.73 67.0 6.22e-01 95.2% 98.0%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.73 67.0 6.09e-01 95.2% 97.2%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.71 51.0 5.65e-01 87.5% 91.7%
2lhfA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.71 64.0 6.26e-01 95.2% 98.9%
2vdfA00 2.40.128.100 Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin 0.69 62.0 5.62e-01 95.8% 98.7%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.68 48.0 5.35e-01 86.3% 90.8%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 48.0 4.56e-01 94.6% 63.2%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.65 59.0 5.84e-01 97.0% 92.6%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.63 48.0 4.68e-01 79.8% 95.2%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.62 57.0 4.78e-01 97.0% 94.8%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.62 57.0 4.60e-01 98.8% 88.3%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.62 56.0 4.86e-01 97.6% 98.0%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.61 48.0 4.61e-01 82.7% 93.8%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.59 53.0 4.43e-01 95.8% 88.2%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.59 53.0 3.88e-01 96.4% 93.7%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.57 53.0 4.33e-01 98.2% 100.0%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.57 48.0 3.63e-01 86.9% 60.9%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.56 50.0 4.63e-01 92.9% 86.3%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 47.0 3.78e-01 87.5% 65.0%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 47.0 3.67e-01 90.5% 97.3%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 4.31e-01 80.4% 88.8%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.55 52.0 4.52e-01 100.0% 92.6%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 37.0 3.98e-01 91.1% 79.9%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.55 47.0 4.13e-01 92.9% 97.2%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 4.00e-01 91.7% 79.1%
6iw2A01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.54 35.0 3.81e-01 85.7% 80.5%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.53 44.0 4.41e-01 92.9% 84.7%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 41.0 4.30e-01 83.9% 96.1%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 46.0 4.42e-01 95.2% 86.3%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.51 44.0 3.33e-01 92.9% 98.3%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.51 46.0 3.54e-01 94.0% 59.3%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.51 40.0 3.27e-01 82.1% 88.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385673 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.85 74.0 7.58e-01 97.6% 94.4%
3964096 5084.1.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.82 72.0 7.11e-01 95.2% 86.3%
4116729 5084.1.1.6 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.81 73.0 7.33e-01 98.2% 92.9%
4042627 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.79 73.0 7.35e-01 95.8% 98.8%
4531587 5084.1.1.35 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Surface_Ag_2 0.79 74.0 6.58e-01 97.0% 96.9%
4130771 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.79 76.0 7.34e-01 100.0% 95.7%
4224449 5084.1.1.29 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 0.79 73.0 7.25e-01 95.8% 96.6%
3838496 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.79 72.0 6.45e-01 95.2% 99.1%
3840004 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.78 72.0 6.57e-01 97.0% 98.1%
3839188 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.78 71.0 6.26e-01 95.8% 95.7%
3975660 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.78 72.0 6.49e-01 95.2% 100.0%
3164538 5084.1.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane 0.78 71.0 6.76e-01 97.0% 95.4%
3970312 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.77 70.0 6.88e-01 95.2% 97.8%
3838398 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.77 70.0 6.85e-01 94.6% 90.0%
4299005 5084.1.1.21 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TSA 0.77 70.0 6.67e-01 94.6% 85.3%
4301927 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.76 72.0 6.37e-01 98.2% 95.6%
3840002 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.76 69.0 6.74e-01 94.6% 99.5%
None — 0.76 63.0 6.73e-01 95.8% 98.6%
4305692 5084.1.1.34 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2715 0.76 69.0 6.94e-01 95.2% 98.8%
200662 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.75 69.0 6.34e-01 95.2% 98.1%
3839285 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.75 69.0 6.67e-01 95.8% 99.5%
3839432 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.75 69.0 6.29e-01 95.8% 85.2%
4417262 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.74 67.0 6.75e-01 95.2% 98.8%
3837982 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.73 68.0 6.64e-01 97.0% 92.2%
4541227 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.72 57.0 5.63e-01 81.5% 84.6%
3838975 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.71 64.0 6.24e-01 95.2% 96.8%
884 5084.2.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › OMPT-like › OMPT-like › OpcA 0.69 62.0 5.62e-01 95.8% 98.7%
5081121 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.66 59.0 5.84e-01 94.6% 97.7%
3976237 5084.6.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.64 54.0 4.83e-01 92.3% 66.4%
4669372 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 57.0 4.59e-01 97.0% 86.8%
4437932 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 56.0 4.41e-01 98.2% 82.1%
1568816 5084.1.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.61 54.0 4.62e-01 95.2% 94.4%
4234836 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.60 53.0 4.39e-01 96.4% 84.9%
3969681 5084.1.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.60 53.0 4.41e-01 95.8% 88.1%
3165307 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.60 53.0 3.87e-01 94.6% 95.4%
3971028 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.59 52.0 3.69e-01 94.0% 95.6%
None — 0.59 53.0 3.88e-01 96.4% 93.7%
4571005 5084.5.1.66 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF2490 0.58 52.0 4.85e-01 94.6% 91.1%
4619594 5084.6.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.57 50.0 4.40e-01 93.5% 94.7%
4005087 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.56 49.0 4.40e-01 92.9% 80.3%
2491331 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 46.0 4.70e-01 94.0% 89.0%
4425267 5084.5.1.6 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprB 0.56 49.0 3.66e-01 94.6% 99.8%
3983528 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.55 51.0 4.47e-01 100.0% 91.5%
4399548 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.55 49.0 3.70e-01 94.6% 96.0%
3387592 5084.5.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.54 46.0 3.63e-01 92.3% 99.2%
2724175 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.54 46.0 3.97e-01 90.5% 65.5%
3742156 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.54 46.0 3.62e-01 91.7% 96.8%
3968806 5084.5.1.68 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27733 0.53 47.0 4.39e-01 95.2% 92.8%
3933957 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.53 42.0 4.34e-01 83.9% 93.1%
3976425 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.53 46.0 4.31e-01 93.5% 99.5%
3967564 5084.5.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.53 45.0 3.47e-01 91.1% 55.0%
3964155 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.53 45.0 3.93e-01 94.0% 99.2%
3644309 71.1.1.12 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.53 46.0 3.77e-01 96.4% 73.9%
3781449 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.52 45.0 3.54e-01 92.9% 82.6%
4440914 5084.5.3.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.51 43.0 2.92e-01 91.7% 81.8%
4603160 5084.5.4.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › YaiO 0.51 45.0 4.02e-01 94.0% 99.6%
4009827 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.51 43.0 3.31e-01 91.7% 99.0%
4064323 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.51 42.0 3.12e-01 86.9% 47.6%
3615602 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 39.0 3.98e-01 88.1% 82.4%
3404731 5084.5.1.37 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.50 41.0 4.00e-01 84.5% 92.2%
D2 high residues 229-326
PDB
Domain cluster: rep: LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00112__D280-376
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00691.26 best OmpA 55.2 1.10e-14 91.8% 88.8%