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NC_021798.1__YP_008241674.1__Phi17-2_gp179__00179
Bact-VirNC_021798.1__YP_008241674.1__Phi17-2_gp179__00179
Identity
- Accession:
- NC_021798 ↗
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Taxonomy
TaxID: 1327972
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-62
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.77 | 65.0 | 5.65e-01 | 98.0% | 78.5% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 46.0 | 3.58e-01 | 70.0% | 31.6% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 55.0 | 5.45e-01 | 100.0% | 90.9% |
| 3ctwB00 | 1.10.8.930 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 | 0.64 | 51.0 | 3.91e-01 | 90.0% | 64.2% |
| 2o4cA03 | 3.30.1370.170 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain | 0.63 | 41.0 | 3.52e-01 | 70.0% | 38.6% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 33.0 | 3.20e-01 | 100.0% | 41.4% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.56 | 38.0 | 3.83e-01 | 90.0% | 69.8% |
| 2p67A01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 35.0 | 3.51e-01 | 72.0% | 67.3% |
| 6w0pB01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.50 | 42.0 | 2.72e-01 | 100.0% | 31.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988048 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.77 | 68.0 | 6.41e-01 | 100.0% | 86.7% |
| 3617137 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 43.0 | 4.24e-01 | 74.0% | 61.8% |
| 3896752 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.64 | 52.0 | 5.03e-01 | 100.0% | 88.3% |
| 3661265 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.60 | 42.0 | 3.11e-01 | 74.0% | 40.8% |
| 3029394 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.59 | 50.0 | 4.95e-01 | 100.0% | 92.6% |
| 5016239 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.53 | 42.0 | 3.47e-01 | 100.0% | 88.2% |