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NC_021798.1__YP_008241684.1__Phi17-2_gp189__00189
Bact-VirNC_021798.1__YP_008241684.1__Phi17-2_gp189__00189
Identity
- Accession:
- NC_021798 ↗
- Kingdom:
- phage
Quality
73.1
mean pLDDT
Taxonomy
TaxID: 1327972
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-56
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 57.0 | 5.67e-01 | 81.5% | 78.9% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.75 | 48.0 | 3.38e-01 | 70.4% | 21.2% |
| 1jxzC02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.72 | 49.0 | 4.81e-01 | 79.6% | 65.0% |
| 1jb0F00 | 1.10.8.110 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF | 0.69 | 47.0 | 3.40e-01 | 70.4% | 46.1% |
| 1o7dC01 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.65 | 50.0 | 4.90e-01 | 85.2% | 95.1% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.64 | 49.0 | 3.74e-01 | 85.2% | 50.4% |
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.61 | 50.0 | 4.05e-01 | 98.1% | 46.6% |
| 7z67A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 46.0 | 3.14e-01 | 92.6% | 83.5% |
| 2x1lB02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.57 | 37.0 | 3.43e-01 | 70.4% | 47.4% |
| 2b4lA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 45.0 | 3.27e-01 | 100.0% | 60.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3888273 | 627.1.1.2 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › DUF5601 | 0.80 | 63.0 | 5.22e-01 | 87.0% | 49.5% |
| 4950678 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.76 | 63.0 | 5.32e-01 | 92.6% | 77.8% |
| 3497466 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.67 | 50.0 | 4.28e-01 | 81.5% | 52.2% |
| 3439762 | 5059.1.1.16 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › SLC35F | 0.67 | 53.0 | 3.45e-01 | 92.6% | 20.4% |
| 3974990 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.64 | 51.0 | 3.99e-01 | 85.2% | 41.8% |
| 3809086 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.61 | 51.0 | 4.45e-01 | 92.6% | 69.4% |
| 3931890 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.55 | 45.0 | 3.55e-01 | 98.1% | 54.6% |
| 3441234 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.51 | 38.0 | 3.52e-01 | 83.3% | 87.7% |