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NC_021799.1__YP_008241762.1__Phi19-1_gp069__00069

Bact-Vir

NC_021799.1__YP_008241762.1__Phi19-1_gp069__00069

Identity

Accession:
NC_021799 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Cellubavirus› Cellulophaga_phage_phi19:1

TaxID: 1327970

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-120
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.03e-01 83.8% 62.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.22e-01 78.8% 94.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 41.0 3.77e-01 78.8% 91.0%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.85e-01 77.8% 88.8%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 42.0 3.22e-01 82.8% 37.9%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 28.0 3.29e-01 75.8% 74.6%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.86e-01 77.8% 88.9%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.68e-01 74.7% 89.6%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.27e-01 73.7% 89.6%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 25.0 3.12e-01 100.0% 75.9%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.61e-01 81.8% 97.7%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.59e-01 78.8% 97.5%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.56e-01 77.8% 91.3%
1nf3C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 37.0 3.50e-01 78.8% 78.9%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 36.0 2.97e-01 73.7% 75.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3930311 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.63 46.0 4.40e-01 77.8% 85.8%
4546371 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.62 42.0 4.00e-01 70.7% 90.8%
3216043 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.62 48.0 4.03e-01 82.8% 82.4%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.61 42.0 4.17e-01 70.7% 89.5%
5016315 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.61 44.0 4.11e-01 74.7% 92.0%
4964696 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.61 43.0 4.11e-01 72.7% 91.3%
3409241 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.61 46.0 3.80e-01 79.8% 78.9%
3519580 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.60 47.0 3.80e-01 82.8% 80.0%
3705153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 43.0 3.89e-01 76.8% 83.7%
3586665 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 31.0 3.88e-01 85.9% 89.1%
3914585 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 42.0 4.20e-01 77.8% 90.5%
3347865 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.56 41.0 3.91e-01 76.8% 85.0%
4931409 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.73e-01 76.8% 89.2%
3926114 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 43.0 3.36e-01 85.9% 75.7%
3254218 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.54 41.0 3.74e-01 82.8% 79.3%
3789520 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.54 40.0 3.68e-01 79.8% 80.7%
3673093 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.54 41.0 3.62e-01 82.8% 76.7%
3497349 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.53 42.0 3.29e-01 86.9% 73.8%
3314271 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.53 41.0 3.71e-01 82.8% 81.5%
3176053 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.56e-01 77.8% 83.1%
5046747 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 45.0 3.06e-01 94.9% 92.1%
3601880 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.52 38.0 3.53e-01 78.8% 97.7%
4963053 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 36.0 3.32e-01 71.7% 64.8%
5018717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 28.0 3.65e-01 72.7% 100.0%
5002480 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 36.0 3.03e-01 75.8% 62.3%
4882206 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.50 34.0 3.24e-01 70.7% 76.9%
3218749 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.50 29.0 3.47e-01 81.8% 93.3%