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NC_021802.1__YP_008241953.1__Phi10-1_gp034__00034

Bact-Vir

NC_021802.1__YP_008241953.1__Phi10-1_gp034__00034

Identity

Accession:
NC_021802 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Cebadecemvirus› Cellulophaga_phage_phi10:1

TaxID: 1327981

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-125
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08299.18 best Bac_DnaA_C 35.8 9.30e-09 73.5% 97.1%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.95 83.0 8.70e-01 96.1% 97.9%
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.88 76.0 7.47e-01 99.0% 86.9%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.61 42.0 4.28e-01 87.3% 72.3%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.61 41.0 4.36e-01 78.4% 79.8%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.60 51.0 5.15e-01 100.0% 97.0%
4b7hA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.58 40.0 3.93e-01 72.5% 73.0%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 43.0 3.93e-01 80.4% 92.8%
4c0aA02 1.10.1000.11 Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 0.55 39.0 3.80e-01 74.5% 83.1%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 38.0 3.82e-01 72.5% 94.3%
3pvlA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.54 38.0 3.10e-01 74.5% 80.3%
3dxqB02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.53 43.0 3.45e-01 88.2% 82.9%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.96e-01 100.0% 86.0%
2hyjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.67e-01 83.3% 83.7%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.53 42.0 4.13e-01 87.3% 80.0%
5k7fA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.70e-01 83.3% 79.7%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 37.0 3.99e-01 75.5% 93.9%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 38.0 3.52e-01 81.4% 74.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4270831 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.94 83.0 8.24e-01 97.1% 88.6%
4281674 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.94 86.0 8.50e-01 100.0% 91.4%
4601417 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.94 82.0 8.49e-01 97.1% 96.8%
4102935 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.94 82.0 8.15e-01 97.1% 88.6%
4051624 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 83.0 8.20e-01 98.0% 89.5%
4524648 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 81.0 8.00e-01 96.1% 87.6%
4125972 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 79.0 7.99e-01 94.1% 90.0%
4559046 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 83.0 8.29e-01 100.0% 91.4%
4174198 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 82.0 8.31e-01 100.0% 94.0%
4266587 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 79.0 8.23e-01 96.1% 95.8%
3385990 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 82.0 8.18e-01 100.0% 91.4%
4197050 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 81.0 8.06e-01 100.0% 91.4%
4106860 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 78.0 8.06e-01 97.1% 96.8%
4606105 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 76.0 7.69e-01 94.1% 90.0%
4346134 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 80.0 7.94e-01 100.0% 91.3%
4067934 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 75.0 7.98e-01 92.2% 98.9%
4604979 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 76.0 7.60e-01 96.1% 87.5%
4165809 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 71.0 7.77e-01 90.2% 100.0%
4347676 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 75.0 7.96e-01 94.1% 100.0%
4529157 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 74.0 7.86e-01 94.1% 100.0%
4606821 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 77.0 7.78e-01 99.0% 94.0%
4146099 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 76.0 7.90e-01 100.0% 98.9%
4437729 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 72.0 7.35e-01 95.1% 90.0%
4379676 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 77.0 7.69e-01 100.0% 92.4%
4533441 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 73.0 7.61e-01 97.1% 96.8%
4022380 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 44.0 4.42e-01 77.5% 78.1%
5007495 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.57 50.0 4.72e-01 100.0% 90.4%
4989143 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 49.0 4.85e-01 98.0% 99.1%
3925195 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.56 30.0 3.54e-01 95.1% 76.9%
3614137 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.56 42.0 3.69e-01 79.4% 93.5%
4984163 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.55 40.0 2.78e-01 75.5% 21.4%
4525548 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.26e-01 87.3% 85.0%
5081366 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.52 34.0 2.97e-01 76.5% 41.2%
4210617 101.1.10.13 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF3452 0.52 43.0 3.90e-01 99.0% 65.5%
5030693 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 3.53e-01 70.6% 76.2%
3805763 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.51 41.0 3.61e-01 85.3% 66.0%
3290036 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.51 37.0 3.34e-01 75.5% 60.0%
4027630 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.51 39.0 3.75e-01 100.0% 70.0%
3975777 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 33.0 3.47e-01 100.0% 71.6%