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NC_021803.1__YP_008242053.1__Phi13-2_gp028__00028
Bact-VirNC_021803.1__YP_008242053.1__Phi13-2_gp028__00028
Identity
- Accession:
- NC_021803 ↗
- Kingdom:
- phage
Quality
81.1
mean pLDDT
Taxonomy
TaxID: 1328030
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-99
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 50.0 | 3.91e-01 | 95.7% | 66.9% |
| 3g7pA00 | 1.10.3100.20 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 | 0.60 | 50.0 | 4.08e-01 | 98.6% | 60.0% |
| 5jrjA02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.59 | 43.0 | 4.65e-01 | 78.3% | 100.0% |
| 2l3wA01 | 1.10.3130.20 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain | 0.59 | 48.0 | 4.01e-01 | 94.2% | 50.8% |
| 2phcB01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.57 | 47.0 | 4.43e-01 | 88.4% | 90.4% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 43.0 | 2.87e-01 | 100.0% | 19.1% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 44.0 | 3.96e-01 | 87.0% | 70.4% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.55 | 41.0 | 3.89e-01 | 78.3% | 82.5% |
| 4r9nA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 36.0 | 2.40e-01 | 100.0% | 19.0% |
| 1d0xA04 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.53 | 45.0 | 3.61e-01 | 94.2% | 49.6% |
| 1wd5A02 | 3.30.1310.20 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › PRTase-like | 0.53 | 36.0 | 3.84e-01 | 71.0% | 90.2% |
| 2qntA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 41.0 | 3.55e-01 | 91.3% | 94.8% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.51 | 42.0 | 3.76e-01 | 92.8% | 98.0% |
| 2i8eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 3.66e-01 | 78.3% | 85.1% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3407891 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.71 | 61.0 | 5.35e-01 | 95.7% | 97.1% |
| 3309853 | 381.1.1.3 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC | 0.61 | 53.0 | 5.03e-01 | 100.0% | 83.5% |
| 3293545 | 381.1.1.3 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC | 0.60 | 52.0 | 4.72e-01 | 100.0% | 77.9% |
| 3863964 | 381.1.1.3 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › zf-C3HC | 0.60 | 51.0 | 4.68e-01 | 100.0% | 74.7% |
| 4300167 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.59 | 48.0 | 3.28e-01 | 89.9% | 99.2% |
| 3383879 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 45.0 | 4.36e-01 | 85.5% | 100.0% |
| 4236566 | 304.8.1.65 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446 | 0.55 | 45.0 | 3.66e-01 | 89.9% | 61.5% |
| 4128678 | 148.1.3.329 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Adhesin_P1_N | 0.55 | 47.0 | 3.85e-01 | 94.2% | 53.6% |
| 4345267 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.54 | 38.0 | 3.72e-01 | 76.8% | 67.5% |
| 3785619 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.54 | 40.0 | 3.29e-01 | 76.8% | 48.7% |
| 4178886 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.54 | 39.0 | 3.41e-01 | 75.4% | 54.0% |
| 4778785 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 44.0 | 4.19e-01 | 91.3% | 85.5% |
| 3814664 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.53 | 34.0 | 3.87e-01 | 71.0% | 100.0% |
| 3219014 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 42.0 | 3.74e-01 | 87.0% | 82.0% |
| 1000517 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 38.0 | 3.31e-01 | 75.4% | 51.5% |
| 3808578 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 38.0 | 3.72e-01 | 75.4% | 70.3% |
| 3324892 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.52 | 41.0 | 3.79e-01 | 92.8% | 78.6% |
| 5010276 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.51 | 36.0 | 3.06e-01 | 75.4% | 98.5% |
| 3196781 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.51 | 41.0 | 3.51e-01 | 88.4% | 87.0% |
| 3973526 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.51 | 45.0 | 4.06e-01 | 98.6% | 92.6% |
| 4928315 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 37.0 | 3.64e-01 | 76.8% | 70.7% |
| 4613383 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.51 | 45.0 | 4.13e-01 | 100.0% | 93.3% |
| 4075464 | 603.1.1.129 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › FliP | 0.51 | 42.0 | 2.96e-01 | 91.3% | 32.6% |