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NC_021803.1__YP_008242105.1__Phi13-2_gp080__00080

Bact-Vir

NC_021803.1__YP_008242105.1__Phi13-2_gp080__00080

Identity

Accession:
NC_021803 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 30.0 4.22e-01 85.9% 88.2%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 46.0 4.80e-01 98.7% 77.1%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.64 44.0 3.89e-01 98.7% 47.5%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.62 48.0 4.40e-01 97.4% 63.1%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 39.0 4.30e-01 87.2% 89.5%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.85e-01 98.7% 95.8%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 3.97e-01 97.4% 74.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.65e-01 98.7% 99.0%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 51.0 4.51e-01 97.4% 79.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.47e-01 97.4% 98.2%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.56e-01 98.7% 99.0%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.46e-01 97.4% 91.7%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.58e-01 100.0% 92.2%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.48e-01 98.7% 98.1%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 4.10e-01 92.3% 89.6%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.29e-01 100.0% 82.5%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.43e-01 98.7% 96.1%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 4.17e-01 93.6% 96.7%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.22e-01 97.4% 88.2%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.43e-01 97.4% 97.0%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 49.0 4.63e-01 100.0% 92.5%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.26e-01 96.2% 100.0%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.22e-01 97.4% 86.2%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 4.32e-01 98.7% 85.5%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 3.91e-01 100.0% 79.3%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 37.0 2.40e-01 71.8% 41.5%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 36.0 3.98e-01 97.4% 90.2%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.17e-01 100.0% 96.5%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.00e-01 98.7% 89.6%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.06e-01 97.4% 83.5%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.59e-01 100.0% 98.9%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 47.0 3.93e-01 100.0% 65.0%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 4.21e-01 100.0% 91.7%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 4.32e-01 98.7% 95.0%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 33.0 2.25e-01 82.1% 17.7%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.95e-01 93.6% 84.7%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.07e-01 97.4% 99.1%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 31.0 3.26e-01 74.4% 63.8%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.52 45.0 3.64e-01 98.7% 70.2%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 43.0 3.93e-01 93.6% 78.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.52 45.0 3.83e-01 100.0% 79.4%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.09e-01 98.7% 96.3%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.14e-01 97.4% 98.1%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.89e-01 97.4% 79.0%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.69e-01 97.4% 88.6%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 4.21e-01 100.0% 98.0%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 4.27e-01 98.7% 96.7%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 4.38e-01 98.7% 100.0%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.92e-01 97.4% 83.3%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 4.16e-01 94.9% 94.4%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.50 42.0 3.14e-01 100.0% 37.1%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590812 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 51.0 5.65e-01 98.7% 95.0%
1487666 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.68 44.0 5.12e-01 94.9% 94.5%
4112791 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.68 41.0 4.88e-01 93.6% 94.0%
3990001 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.67 43.0 5.04e-01 93.6% 96.2%
5078470 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 48.0 4.72e-01 98.7% 72.9%
2095506 1170.1.2.6 beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › UL128 0.63 38.0 4.33e-01 87.2% 83.9%
4650162 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.67e-01 93.6% 87.7%
3247329 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 53.0 4.78e-01 98.7% 88.2%
3556135 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.59 53.0 4.25e-01 98.7% 60.0%
3628059 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 52.0 4.48e-01 100.0% 84.8%
3621726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 51.0 4.43e-01 98.7% 81.6%
3398379 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 50.0 4.47e-01 100.0% 90.0%
3255034 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 4.34e-01 100.0% 88.1%
4960280 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 4.08e-01 97.4% 65.3%
3869436 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.75e-01 100.0% 91.0%
3744143 220.1.1.32 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.58 51.0 4.18e-01 100.0% 67.3%
3698484 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.06e-01 98.7% 89.7%
3572708 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.46e-01 98.7% 80.9%
3891866 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.58 51.0 4.24e-01 100.0% 87.9%
3896415 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 50.0 4.77e-01 100.0% 93.7%
3548074 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 4.41e-01 100.0% 87.5%
3277005 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.57 50.0 4.20e-01 100.0% 62.9%
3570843 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 4.49e-01 98.7% 83.6%
3262357 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.11e-01 100.0% 56.7%
3995153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.59e-01 98.7% 88.6%
3906424 220.1.1.49 beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.57 50.0 4.17e-01 100.0% 64.3%
3478704 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 4.33e-01 97.4% 90.8%
3706884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.40e-01 98.7% 85.5%
3921879 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 49.0 3.91e-01 98.7% 57.5%
3712139 220.1.1.29 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.56 48.0 4.35e-01 98.7% 84.5%
3887127 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 48.0 4.22e-01 97.4% 76.7%
3700740 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.51e-01 98.7% 87.0%
3576021 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 49.0 4.13e-01 98.7% 72.3%
3595376 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 3.84e-01 97.4% 51.9%
3262203 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 3.88e-01 98.7% 55.5%
3920767 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 4.53e-01 100.0% 86.0%
3414375 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.11e-01 98.7% 78.1%
3699577 220.1.1.236 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_27 0.55 48.0 4.33e-01 98.7% 90.0%
3250163 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.49e-01 97.4% 88.4%
4983814 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 4.45e-01 100.0% 95.2%
4622871 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 4.30e-01 97.4% 100.0%
3795635 220.1.1.29 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.55 47.0 3.92e-01 98.7% 75.9%
3912099 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 4.39e-01 98.7% 88.6%
3863963 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 47.0 4.08e-01 98.7% 88.0%
137916 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.54 38.0 4.13e-01 93.6% 90.8%
3919542 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.54 48.0 4.46e-01 100.0% 86.0%
5016434 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.93e-01 97.4% 78.7%
4025181 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 47.0 4.24e-01 98.7% 90.0%
3533574 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 47.0 3.84e-01 97.4% 65.5%
3911252 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 48.0 4.56e-01 100.0% 96.8%
3518065 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 47.0 3.96e-01 98.7% 79.3%
4065466 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.53 43.0 4.34e-01 97.4% 87.5%
3256547 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.16e-01 100.0% 74.0%
3890869 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.53 45.0 3.55e-01 97.4% 59.4%
3255827 220.1.1.29 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.53 46.0 3.91e-01 98.7% 65.2%
3791995 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.53 46.0 3.74e-01 98.7% 68.4%
3231961 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 4.13e-01 92.3% 98.9%
3271442 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 46.0 3.77e-01 100.0% 66.0%
3890749 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.41e-01 97.4% 96.7%
3623467 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 33.0 2.05e-01 82.1% 12.4%
3936608 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 4.08e-01 98.7% 95.5%
3264236 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 46.0 4.29e-01 98.7% 87.0%
3614421 220.1.1.236 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_27 0.52 45.0 4.18e-01 97.4% 92.0%
3906078 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 46.0 4.28e-01 100.0% 92.0%
3247727 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 46.0 3.82e-01 100.0% 69.3%
3617706 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 4.08e-01 94.9% 98.0%
3934850 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 3.94e-01 98.7% 79.2%
4679015 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.52 42.0 4.25e-01 98.7% 88.7%
3584295 220.1.1.118 beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.51 44.0 3.83e-01 98.7% 74.4%
3273591 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 44.0 3.76e-01 97.4% 66.2%
3884716 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.51 43.0 3.71e-01 98.7% 74.1%
3417244 220.1.1.64 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.51 44.0 4.21e-01 100.0% 92.6%
3180341 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.51 40.0 2.64e-01 85.9% 100.0%
3874132 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.50 44.0 3.91e-01 100.0% 79.1%
3413910 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.50 42.0 3.63e-01 97.4% 76.3%