←Back to structures

NC_021803.1__YP_008242121.1__Phi13-2_gp096__00096

Bact-Vir

NC_021803.1__YP_008242121.1__Phi13-2_gp096__00096

Identity

Accession:
NC_021803 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pachyviridae› Baltivirus› Cellulophaga_phage_phi13:2

TaxID: 1328030

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-104
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6mrc100 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.65 53.0 5.34e-01 100.0% 86.0%
1p3hB00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.62 51.0 5.11e-01 100.0% 87.8%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 33.0 3.66e-01 98.0% 76.7%
5b3hC01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 20.0 2.63e-01 70.4% 60.4%
2cd9A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.50 45.0 3.75e-01 100.0% 62.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4082853 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.70 57.0 5.81e-01 100.0% 89.4%
4378688 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.69 56.0 5.73e-01 100.0% 89.5%
4341607 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.69 55.0 5.57e-01 100.0% 86.7%
2794379 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.62 48.0 4.91e-01 100.0% 84.2%
4029028 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.62 51.0 5.09e-01 100.0% 86.0%
4417276 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.61 53.0 5.29e-01 100.0% 91.0%
4021131 236.1.1.0 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.55 43.0 3.64e-01 100.0% 51.2%
4517901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 30.0 3.11e-01 95.9% 60.0%
D2 high residues 112-198
PDB
Domain cluster: rep: MG752970.1__AVH85358.1__RsoM2USA_430__00430__D11-89
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00166.27 best Cpn10 33.4 5.20e-08 98.9% 91.4%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g31A00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.73 67.0 6.20e-01 100.0% 93.5%
6mrc100 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.70 65.0 6.18e-01 100.0% 90.0%
2jmcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 42.0 4.44e-01 96.6% 70.1%
1p3hB00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.67 62.0 5.92e-01 100.0% 92.9%
4oh1A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.58 53.0 3.93e-01 100.0% 53.7%
3ww3A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 3.10e-01 82.8% 94.6%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 46.0 3.95e-01 98.9% 62.2%
3ckiB00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 44.0 4.01e-01 97.7% 67.8%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.74e-01 85.1% 69.8%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 36.0 3.48e-01 100.0% 64.3%
1egiA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 39.0 3.50e-01 83.9% 89.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4173931 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.81 76.0 7.34e-01 100.0% 94.7%
4417276 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 72.0 6.92e-01 100.0% 96.0%
4147631 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 61.0 6.54e-01 100.0% 94.7%
4082853 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 73.0 7.10e-01 100.0% 94.7%
3674955 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.77 60.0 6.24e-01 100.0% 88.7%
3359945 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.75 68.0 6.54e-01 100.0% 86.6%
4182470 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.74 69.0 6.71e-01 100.0% 94.7%
4378688 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.74 69.0 6.74e-01 100.0% 94.7%
4341607 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.74 69.0 6.64e-01 100.0% 91.8%
470 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.73 67.0 6.20e-01 100.0% 93.5%
3594024 236.1.2.0 ↗ beta barrels › GroES-like › GroES-related › GroES 0.72 66.0 6.54e-01 100.0% 94.4%
3938500 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.71 65.0 6.48e-01 98.9% 98.9%
2794379 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.69 62.0 6.03e-01 100.0% 89.5%
4995717 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.69 64.0 5.80e-01 100.0% 89.5%
4029028 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.68 63.0 5.99e-01 100.0% 91.0%
4119817 236.1.1.0 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.67 54.0 4.31e-01 100.0% 44.8%
4016191 236.1.1.0 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.66 55.0 4.23e-01 100.0% 42.8%
4023040 236.1.1.2 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N,ADH_zinc_N_2 0.63 54.0 4.01e-01 100.0% 39.0%
4161990 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.62 54.0 4.24e-01 100.0% 46.3%
3675653 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.61 38.0 4.06e-01 82.8% 72.0%
3226474 2.1.1.253 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29478 0.59 40.0 4.31e-01 96.6% 80.0%
4567402 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.59 48.0 3.26e-01 94.3% 25.4%
4390141 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.59 51.0 3.73e-01 100.0% 37.7%
3211657 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.58 43.0 3.68e-01 88.5% 48.9%
4593097 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.58 53.0 4.31e-01 100.0% 58.1%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 32.0 3.58e-01 78.2% 72.9%
3290347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.70e-01 83.9% 67.3%
3389457 223.1.1.11 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.53 46.0 3.71e-01 95.4% 70.9%
3512643 3767.1.1.2 ↗ a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Dicer_platform 0.51 44.0 3.57e-01 100.0% 73.3%
3205052 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.50 41.0 2.61e-01 98.9% 16.5%