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NC_021803.1__YP_008242129.1__Phi13-2_gp104__00104
Bact-VirNC_021803.1__YP_008242129.1__Phi13-2_gp104__00104
Identity
- Accession:
- NC_021803 ↗
- Kingdom:
- phage
Quality
70.6
mean pLDDT
Taxonomy
TaxID: 1328030
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 273-361
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 34.0 | 3.65e-01 | 93.3% | 56.6% |
| 2uuxA01 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.61 | 21.0 | 3.13e-01 | 86.5% | 63.9% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 30.0 | 3.48e-01 | 97.8% | 66.2% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 34.0 | 3.25e-01 | 98.9% | 45.9% |
| 1vrmA01 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.59 | 31.0 | 2.36e-01 | 98.9% | 21.2% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.56 | 29.0 | 3.07e-01 | 93.3% | 53.2% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 29.0 | 2.88e-01 | 95.5% | 47.3% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 43.0 | 3.25e-01 | 95.5% | 92.6% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 37.0 | 2.69e-01 | 78.7% | 89.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 34.0 | 3.96e-01 | 93.3% | 71.7% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 33.0 | 3.89e-01 | 92.1% | 71.2% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 32.0 | 3.84e-01 | 92.1% | 76.4% |
| 4602886 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.61 | 30.0 | 3.29e-01 | 93.3% | 54.3% |
| 3446239 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.58 | 28.0 | 3.00e-01 | 96.6% | 49.3% |
| 3607467 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 28.0 | 2.88e-01 | 93.3% | 42.2% |
| 3680215 | 109.4.1.880 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LTN1_E3_ligase_6th | 0.56 | 42.0 | 2.52e-01 | 79.8% | 27.8% |
| 3175336 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 34.0 | 3.60e-01 | 98.9% | 72.0% |
| 3895031 | 221.1.1.94 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AIP3 | 0.53 | 26.0 | 2.67e-01 | 92.1% | 43.5% |
| 3167354 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.51 | 27.0 | 2.96e-01 | 82.0% | 60.3% |
| 3833740 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.51 | 37.0 | 2.36e-01 | 77.5% | 63.9% |
| 3880336 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 42.0 | 2.95e-01 | 93.3% | 90.8% |