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NC_021803.1__YP_008242143.1__Phi13-2_gp118__00118
Bact-VirNC_021803.1__YP_008242143.1__Phi13-2_gp118__00118
Identity
- Accession:
- NC_021803 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
TaxID: 1328030
Cluster
View cluster (60 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-78
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 41.0 | 3.34e-01 | 76.9% | 35.8% |
| 3fcnA00 | 1.20.1220.20 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Uncharcterised protein PF01724 | 0.62 | 42.0 | 3.36e-01 | 70.5% | 40.5% |
| 4a64A01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.61 | 43.0 | 3.65e-01 | 80.8% | 43.9% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 50.0 | 4.50e-01 | 97.4% | 65.7% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 50.0 | 4.75e-01 | 96.2% | 78.3% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.58 | 47.0 | 4.06e-01 | 100.0% | 56.0% |
| 2b7mA00 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.56 | 50.0 | 3.04e-01 | 100.0% | 28.8% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.54 | 40.0 | 3.92e-01 | 79.5% | 79.1% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 43.0 | 3.85e-01 | 89.7% | 68.4% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.53 | 41.0 | 3.78e-01 | 87.2% | 67.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4014274 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 49.0 | 3.46e-01 | 75.6% | 75.0% |
| 3458710 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.65 | 50.0 | 3.23e-01 | 83.3% | 35.8% |
| 4944710 | 604.5.1.82 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TrkA_C | 0.64 | 53.0 | 4.97e-01 | 96.2% | 72.6% |
| 3707638 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 50.0 | 3.64e-01 | 87.2% | 66.5% |
| 3965514 | 507.1.1.2 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaG_DnaB_bind | 0.62 | 49.0 | 4.12e-01 | 87.2% | 85.9% |
| 3176761 | 192.15.1.177 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF28401 | 0.62 | 55.0 | 4.64e-01 | 97.4% | 60.8% |
| 4258578 | 604.14.1.1 ↗ | alpha bundles › Spectrin repeat-like › PPK N-terminal domain-like › PPK N-terminal domain-like › PP_kinase_N | 0.60 | 47.0 | 4.31e-01 | 96.2% | 64.8% |
| 3486748 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 48.0 | 4.41e-01 | 96.2% | 70.5% |
| 3210129 | 4982.1.1.0 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain | 0.57 | 38.0 | 3.62e-01 | 98.7% | 56.8% |
| 3472984 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 45.0 | 3.54e-01 | 91.0% | 54.9% |
| 5040477 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.51 | 42.0 | 3.61e-01 | 93.6% | 56.8% |
D2
medium
residues 79-161
Domain cluster:
rep: IMGVR_UViG_3300022555_000046-3300022555-Ga0212088_1000074962__D73-171
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rgxA02 | 2.60.40.4230 | Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain | 0.64 | 43.0 | 4.70e-01 | 100.0% | 89.1% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.62 | 48.0 | 3.79e-01 | 85.5% | 87.6% |
| 3pieC01 | 3.40.50.12390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 44.0 | 3.16e-01 | 80.7% | 95.1% |
| 4zxwB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 45.0 | 3.65e-01 | 85.5% | 79.1% |
| 7o0eA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 42.0 | 4.30e-01 | 100.0% | 78.3% |
| 2fsuA00 | 3.40.50.11310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Bacterial phosphonate metabolism protein PhnH | 0.58 | 44.0 | 3.58e-01 | 84.3% | 95.3% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 39.0 | 3.58e-01 | 71.1% | 69.6% |
| 2zagA02 | 2.40.128.390 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 39.0 | 3.96e-01 | 71.1% | 94.0% |
| 3fnaB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 42.0 | 3.79e-01 | 83.1% | 78.9% |
| 3v8vA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.55 | 35.0 | 2.60e-01 | 81.9% | 24.5% |
| 3h78A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 38.0 | 3.24e-01 | 74.7% | 99.4% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 47.0 | 4.04e-01 | 100.0% | 87.2% |
| 5jcvA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.54 | 41.0 | 3.36e-01 | 85.5% | 88.6% |
| 4mboA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 3.89e-01 | 100.0% | 63.7% |
| 1i7qA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.54 | 45.0 | 2.86e-01 | 98.8% | 55.7% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.53 | 42.0 | 4.37e-01 | 97.6% | 97.3% |
| 3ne5B01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.52 | 39.0 | 3.92e-01 | 96.4% | 79.1% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.63e-01 | 80.7% | 75.3% |
| 3lv9A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 39.0 | 3.44e-01 | 85.5% | 76.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039833 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.64 | 56.0 | 4.73e-01 | 97.6% | 69.3% |
| None | — | 0.62 | 46.0 | 3.18e-01 | 80.7% | 26.0% | |
| 4084909 | 7578.1.1.1 ↗ | a/b three-layered sandwiches › PhnH-like › PhnH-like › PhnH-like › PhnH | 0.60 | 47.0 | 3.71e-01 | 88.0% | 96.8% |
| 4348505 | 7578.1.1.1 ↗ | a/b three-layered sandwiches › PhnH-like › PhnH-like › PhnH-like › PhnH | 0.59 | 46.0 | 3.71e-01 | 88.0% | 93.3% |
| 4000793 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 50.0 | 4.62e-01 | 98.8% | 87.3% |
| 3701032 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.58 | 46.0 | 3.83e-01 | 89.2% | 59.4% |
| 3612297 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.58 | 40.0 | 2.96e-01 | 73.5% | 82.5% |
| 4340753 | 2007.1.3.22 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Radical_SAM_N | 0.56 | 40.0 | 2.80e-01 | 77.1% | 34.2% |
| 2814453 | 12.6.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_92 | 0.54 | 37.0 | 3.58e-01 | 92.8% | 62.1% |
| 3977109 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 41.0 | 3.43e-01 | 83.1% | 86.7% |
| 4014581 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.53 | 47.0 | 3.50e-01 | 100.0% | 40.0% |
| 4129516 | 11.1.5.131 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF5462 | 0.52 | 43.0 | 3.70e-01 | 94.0% | 100.0% |
| 1498227 | 12.6.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_92 | 0.52 | 35.0 | 3.41e-01 | 92.8% | 61.5% |
| 4545327 | 325.1.3.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Pyrimidine nucleoside phosphorylase C-terminal domain › PYNP_C | 0.50 | 39.0 | 3.81e-01 | 85.5% | 86.3% |