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NC_021806.1__YP_008242229.2__N356_gp006__00006

Bact-Vir

NC_021806.1__YP_008242229.2__N356_gp006__00006

Identity

Accession:
NC_021806 ↗
Kingdom:
phage

Quality

47.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Crassvirales› Steigviridae› Akihdevirus› Cellulophaga_phage_phi14:2

TaxID: 1327990

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 151-233
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 3.14e-01 85.5% 88.5%
3zypA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 3.78e-01 94.0% 56.2%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 43.0 2.84e-01 77.1% 93.5%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 49.0 4.22e-01 91.6% 100.0%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 3.05e-01 88.0% 85.8%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.10e-01 95.2% 84.0%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 45.0 3.09e-01 88.0% 94.5%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.56 44.0 2.77e-01 85.5% 38.3%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.56 46.0 4.34e-01 90.4% 86.0%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.56 45.0 4.13e-01 90.4% 83.9%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.55 44.0 4.67e-01 96.4% 100.0%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 43.0 3.74e-01 86.7% 100.0%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 3.07e-01 90.4% 85.7%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.20e-01 95.2% 91.8%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 3.13e-01 97.6% 75.1%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 25.0 3.14e-01 90.4% 73.3%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.13e-01 96.4% 84.7%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.54 46.0 4.03e-01 100.0% 82.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 4.53e-01 96.4% 94.6%
2ghsA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 3.11e-01 95.2% 91.9%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.77e-01 88.0% 77.9%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.97e-01 96.4% 82.7%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 39.0 2.70e-01 80.7% 40.5%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 44.0 2.94e-01 91.6% 72.6%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 4.08e-01 91.6% 85.3%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.67e-01 98.8% 90.1%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.52 31.0 3.55e-01 74.7% 88.9%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.96e-01 96.4% 75.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.98e-01 96.4% 74.6%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.95e-01 96.4% 84.1%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.51 39.0 2.71e-01 83.1% 84.9%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.88e-01 96.4% 81.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.80e-01 94.0% 92.7%
3512402 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 45.0 3.02e-01 74.7% 35.4%
4965523 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.64e-01 94.0% 100.0%
None — 0.61 44.0 2.94e-01 77.1% 34.9%
3622714 5.1.5.113 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR19_1st 0.60 44.0 2.92e-01 77.1% 34.9%
4024706 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 45.0 2.99e-01 80.7% 87.3%
None — 0.58 50.0 3.27e-01 96.4% 77.1%
5047657 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 37.0 4.27e-01 74.7% 98.2%
3930197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.81e-01 95.2% 60.0%
3419243 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.58 50.0 3.38e-01 96.4% 86.7%
None — 0.58 50.0 3.39e-01 96.4% 70.0%
3509387 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 48.0 4.31e-01 94.0% 82.5%
3830535 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 46.0 3.20e-01 88.0% 54.5%
3888391 5.1.4.325 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30552 0.57 49.0 3.29e-01 97.6% 92.9%
3296644 5.1.4.266 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IFT122_1st 0.57 49.0 3.32e-01 96.4% 87.8%
3211396 5.1.4.167 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.57 44.0 2.96e-01 85.5% 28.9%
3259368 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.56 44.0 2.78e-01 85.5% 34.3%
3627570 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.56 47.0 3.08e-01 96.4% 64.5%
3844766 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 46.0 2.92e-01 89.2% 74.4%
2501356 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 48.0 3.19e-01 97.6% 67.8%
4834004 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.55 39.0 3.90e-01 77.1% 82.2%
3406442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.16e-01 100.0% 85.0%
3608124 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 46.0 3.04e-01 95.2% 93.6%
3530256 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.54 46.0 3.01e-01 95.2% 82.1%
3595410 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 46.0 3.03e-01 97.6% 81.8%
3769451 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 3.02e-01 91.6% 44.0%
3775858 5.1.4.547 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF4800, NBCH_WD40 0.54 45.0 3.01e-01 97.6% 83.0%
3705844 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 2.68e-01 96.4% 45.4%
5052666 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.54 44.0 4.25e-01 90.4% 91.5%
4912068 5.1.4.359 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Utp12, ANAPC4_WD40 0.54 46.0 3.11e-01 97.6% 91.4%
3714545 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 3.05e-01 97.6% 88.9%
3485287 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 45.0 3.54e-01 100.0% 50.7%
3187543 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 3.02e-01 96.4% 81.9%
4354023 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 45.0 3.61e-01 98.8% 79.5%
3167976 5.1.4.289 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40 0.54 45.0 2.68e-01 95.2% 49.0%
3917082 5.1.4.167 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.54 45.0 3.02e-01 96.4% 92.8%
2123569 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.53 45.0 2.93e-01 95.2% 87.5%
3994301 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 45.0 3.68e-01 98.8% 73.5%
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.53 43.0 4.16e-01 90.4% 89.2%
3886970 5.1.4.130 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › AAA_16 0.53 40.0 2.42e-01 83.1% 20.9%
4021521 5.1.4.322 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_IFT122_1st 0.53 45.0 2.67e-01 96.4% 47.8%
5000262 5.1.11.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_CGLA 0.53 46.0 3.00e-01 98.8% 94.9%
3239485 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 43.0 3.78e-01 94.0% 58.5%
3788785 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.53 45.0 2.87e-01 97.6% 75.1%
3966121 5.1.5.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Cytochrom_D1 0.52 43.0 2.83e-01 92.8% 84.4%
3707019 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.77e-01 91.6% 62.1%
3223871 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 44.0 3.44e-01 97.6% 81.6%
3415744 5.1.4.420 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Aladin 0.51 44.0 2.94e-01 100.0% 86.8%
3927632 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 44.0 3.45e-01 100.0% 79.0%
3820070 5.1.2.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.51 42.0 3.22e-01 96.4% 77.3%
3869017 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.74e-01 91.6% 47.7%
3550096 5.1.4.425 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR19_1st 0.51 43.0 2.89e-01 95.2% 90.0%
4131958 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 41.0 3.55e-01 90.4% 97.8%
3266877 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.51 43.0 3.01e-01 97.6% 73.6%
3927304 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.72e-01 90.4% 62.4%
3254772 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 40.0 3.09e-01 90.4% 76.3%
3389900 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 42.0 3.32e-01 95.2% 74.7%
3216882 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.84e-01 96.4% 67.4%
3795533 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.70e-01 91.6% 47.4%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.94e-01 91.6% 81.1%