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NC_021867.1__YP_008320473.1__N375_gp59__00059
Bact-VirNC_021867.1__YP_008320473.1__N375_gp59__00059
Identity
- Accession:
- NC_021867 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
TaxID: 1325731
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-92
Domain cluster:
rep: OR475272.1__WNM67085.1__SEA_SCHOMBER_64__00064__D3-92
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01807.26 best | Zn_ribbon_DnaG | 78.6 | 3.60e-22 | 100.0% | 85.7% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.95 | 91.0 | 8.50e-01 | 100.0% | 86.3% |
| 3ly1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 43.0 | 3.75e-01 | 73.6% | 61.2% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.57 | 28.0 | 3.06e-01 | 72.4% | 51.4% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.57 | 45.0 | 3.59e-01 | 87.4% | 88.7% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.54 | 43.0 | 3.88e-01 | 89.7% | 69.0% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.54 | 41.0 | 4.02e-01 | 83.9% | 85.4% |
| 4qq1C03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 37.0 | 3.76e-01 | 74.7% | 92.0% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.52 | 41.0 | 3.97e-01 | 89.7% | 99.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8015 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.95 | 91.0 | 8.50e-01 | 100.0% | 86.3% |
| 4680318 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.92 | 88.0 | 8.69e-01 | 100.0% | 96.7% |
| 4166935 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.92 | 87.0 | 8.25e-01 | 100.0% | 88.0% |
| 4539347 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.92 | 88.0 | 8.29e-01 | 100.0% | 89.0% |
| 5003468 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.86 | 80.0 | 7.49e-01 | 100.0% | 88.6% |
| 3590274 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 76.0 | 7.54e-01 | 100.0% | 98.9% |
| 3274279 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 59.0 | 6.02e-01 | 77.0% | 90.6% |
| 4260807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 55.0 | 6.05e-01 | 72.4% | 100.0% |
| 4639076 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 67.0 | 6.51e-01 | 100.0% | 86.3% |
| 4940785 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 69.0 | 6.27e-01 | 100.0% | 89.6% |
| 3943026 | 375.1.1.39 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon | 0.75 | 67.0 | 6.25e-01 | 98.9% | 82.6% |
| 4023805 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 60.0 | 6.13e-01 | 90.8% | 100.0% |
| 4971601 | 241.14.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C | 0.72 | 49.0 | 5.38e-01 | 71.3% | 94.3% |
| 3412674 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 51.0 | 5.12e-01 | 75.9% | 95.6% |
| 3056107 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 60.0 | 5.66e-01 | 92.0% | 88.6% |
| 3576759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 50.0 | 5.43e-01 | 73.6% | 98.6% |
| 3928378 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 48.0 | 4.85e-01 | 70.1% | 75.3% |
| 4995759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 55.0 | 5.69e-01 | 86.2% | 100.0% |
| 4931934 | 241.9.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like | 0.65 | 46.0 | 4.34e-01 | 73.6% | 95.2% |
| 5022991 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.62 | 45.0 | 4.53e-01 | 88.5% | 74.4% |
| 3698130 | 216.1.1.14 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med1 | 0.61 | 44.0 | 4.14e-01 | 74.7% | 100.0% |
| 4202634 | 375.1.1.11 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27 | 0.60 | 29.0 | 3.31e-01 | 71.3% | 60.0% |
| 3617987 | 4099.1.1.28 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 | 0.57 | 39.0 | 4.01e-01 | 72.4% | 94.1% |
| 3599109 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 42.0 | 3.26e-01 | 92.0% | 36.0% |
| 3594518 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.54 | 46.0 | 3.35e-01 | 98.9% | 85.7% |
| 3462595 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.54 | 41.0 | 4.07e-01 | 92.0% | 78.9% |
| 184667 | 331.16.1.1 ↗ | a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 | 0.54 | 41.0 | 4.02e-01 | 83.9% | 85.4% |
| 5073839 | 2008.5.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Uncharacterized protein AF_2093 C-terminal domain › Uncharacterized protein AF_2093 C-terminal domain › DUF6834_C | 0.53 | 39.0 | 3.41e-01 | 78.2% | 94.8% |
| 5017022 | 331.1.1.27 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS | 0.53 | 43.0 | 3.04e-01 | 89.7% | 28.4% |
| 4928161 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.53 | 43.0 | 4.20e-01 | 92.0% | 91.0% |
| 3451705 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.53 | 42.0 | 3.65e-01 | 88.5% | 61.4% |
| 4169658 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 43.0 | 4.08e-01 | 92.0% | 76.7% |
| 3783751 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.50 | 43.0 | 3.00e-01 | 100.0% | 61.5% |
D2
high
residues 109-240
Domain cluster:
rep: KX119204.1__ANT43181.1__X__00011__D99-235
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08275.18 best | DNAG_N | 46.2 | 6.50e-12 | 85.6% | 71.1% |
D3
medium
residues 302-399
Domain cluster:
rep: KU599888.1__ANB41024.1__X__00052__D1-86
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF28547.1 best | CHD_PDZ-protease | 73.4 | 3.00e-20 | 89.8% | 63.8% |