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NC_021868.1__YP_008320549.1__BN19_073__00072

Bact-Vir

NC_021868.1__YP_008320549.1__BN19_073__00072

Identity

Accession:
NC_021868 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saphexavirus› Streptococcus_phage_SP-QS1

TaxID: 1208587

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-100
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.70 55.0 5.47e-01 84.0% 93.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.06e-01 74.7% 84.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.12e-01 74.7% 88.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 45.0 4.58e-01 72.0% 78.7%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.65 45.0 3.49e-01 72.0% 33.7%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 47.0 4.86e-01 78.7% 82.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.46e-01 72.0% 78.7%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 44.0 3.54e-01 72.0% 38.0%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 46.0 4.02e-01 77.3% 52.7%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.62 44.0 3.33e-01 76.0% 30.4%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 3.96e-01 100.0% 86.0%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 3.65e-01 70.7% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.11e-01 72.0% 82.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 44.0 3.56e-01 88.0% 79.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 3.99e-01 77.3% 71.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 49.0 3.77e-01 96.0% 86.7%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 38.0 3.77e-01 72.0% 78.0%
6u8yK01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.56 40.0 3.23e-01 77.3% 42.9%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.77e-01 96.0% 95.8%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.84e-01 92.0% 26.1%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.97e-01 96.0% 26.4%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.52 36.0 3.14e-01 73.3% 67.2%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 46.0 3.07e-01 100.0% 49.2%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 43.0 3.66e-01 97.3% 95.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4051081 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.72 50.0 5.53e-01 74.7% 91.7%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.30e-01 76.0% 94.3%
4976092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 4.94e-01 78.7% 68.9%
3174858 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.70 50.0 3.74e-01 76.0% 31.7%
3170024 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.66 45.0 3.35e-01 70.7% 28.9%
3725169 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.64 45.0 3.47e-01 74.7% 33.7%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 44.0 4.31e-01 72.0% 71.2%
3194179 2003.1.3.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.63 44.0 3.04e-01 73.3% 49.3%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.33e-01 72.0% 74.7%
5054152 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 45.0 3.83e-01 76.0% 60.0%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.62 43.0 4.46e-01 74.7% 82.9%
3414096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 42.0 3.53e-01 72.0% 74.6%
3407209 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.60 44.0 3.41e-01 78.7% 34.3%
3788749 6109.1.1.0 ↗ a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 0.60 46.0 3.78e-01 84.0% 55.3%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.60 43.0 4.39e-01 76.0% 84.3%
5029255 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.60 41.0 3.69e-01 70.7% 89.5%
3788173 2003.1.3.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like 0.59 43.0 2.63e-01 77.3% 44.6%
4020042 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.59 41.0 2.92e-01 73.3% 52.4%
3938274 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.59 40.0 3.01e-01 72.0% 74.1%
3274683 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.59 41.0 2.74e-01 73.3% 44.1%
3622698 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 52.0 3.36e-01 100.0% 42.4%
3736443 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.57 41.0 2.76e-01 78.7% 46.3%
3279407 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.56e-01 76.0% 77.3%
3738775 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 38.0 3.20e-01 72.0% 76.3%
4950455 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 38.0 3.88e-01 70.7% 91.4%
3707903 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.53 35.0 2.75e-01 70.7% 39.4%
3938671 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 44.0 2.91e-01 94.7% 97.0%
3526525 5.1.3.161 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_6 0.53 39.0 2.50e-01 77.3% 49.5%
3932999 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.52 43.0 2.87e-01 94.7% 95.8%
4122796 2004.1.1.1154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, SbcC_Walker_B 0.51 39.0 2.46e-01 82.7% 88.1%
None — 0.50 42.0 2.82e-01 94.7% 95.5%