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NC_022054.2__YP_010731558.1__N855_gp33__00033

Bact-Vir

NC_022054.2__YP_010731558.1__N855_gp33__00033

Identity

Accession:
NC_022054 ↗
Kingdom:
phage

Quality

65.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mapvirus› Mycobacterium_phage_Muddy

TaxID: 1340829

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-95
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lfuA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 51.0 4.93e-01 76.2% 97.1%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 51.0 4.73e-01 81.0% 95.1%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.67 47.0 3.50e-01 76.2% 42.3%
2afsA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.66 54.0 3.44e-01 90.5% 58.8%
1xp8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.62 42.0 4.29e-01 71.4% 98.3%
5ktaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 47.0 3.43e-01 85.7% 43.8%
4c0kA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 48.0 4.21e-01 100.0% 57.4%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.60 48.0 4.50e-01 100.0% 72.8%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.60 51.0 5.02e-01 98.4% 92.9%
3iylB02 1.10.2050.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 0.60 45.0 3.66e-01 85.7% 69.4%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.59 49.0 3.67e-01 100.0% 62.4%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 44.0 3.88e-01 84.1% 90.8%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 41.0 4.03e-01 74.6% 91.0%
5mx4A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 49.0 3.42e-01 100.0% 91.4%
3s6pB01 1.20.1690.20 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › 0.57 34.0 2.97e-01 71.4% 40.0%
1e6cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 3.45e-01 96.8% 91.8%
1y8qD02 1.10.10.520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 0.55 42.0 3.12e-01 87.3% 85.2%
4qiwK00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.53 39.0 4.17e-01 79.4% 94.6%
6xasW01 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.52 38.0 4.16e-01 82.5% 100.0%
1y8qC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 2.45e-01 79.4% 16.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3854329 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.61 50.0 4.03e-01 93.7% 84.6%
3590722 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.59 43.0 3.62e-01 77.8% 64.5%
3494678 220.1.1.60 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ECT2_PH 0.59 40.0 2.77e-01 73.0% 55.3%
3988541 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.58 46.0 4.48e-01 85.7% 98.5%
3245021 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.57 40.0 3.70e-01 77.8% 92.2%
3194921 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.56 45.0 2.71e-01 88.9% 15.3%
4670439 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.56 49.0 3.38e-01 100.0% 35.6%
None — 0.54 45.0 3.22e-01 100.0% 27.8%
3587655 829.1.1.0 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB 0.54 45.0 4.33e-01 100.0% 94.7%
3305941 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 44.0 3.72e-01 96.8% 93.3%
3622049 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.53 40.0 4.08e-01 81.0% 90.0%
5052492 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 39.0 2.93e-01 85.7% 84.6%
4354455 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.52 43.0 4.23e-01 100.0% 91.4%
3243336 5001.1.1.33 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srh 0.51 43.0 2.80e-01 100.0% 37.0%
3689792 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.50 33.0 2.56e-01 74.6% 30.0%
3578987 2498.1.1.69 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PIG-S 0.50 43.0 3.14e-01 100.0% 83.2%