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NC_022088.2__YP_008431099.1__TROLL_26__00026

Bact-Vir

NC_022088.2__YP_008431099.1__TROLL_26__00026

Identity

Accession:
NC_022088 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4edgA03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.91 63.0 6.52e-01 78.1% 76.7%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.89 62.0 4.71e-01 73.4% 34.6%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 55.0 6.23e-01 87.5% 100.0%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 60.0 6.14e-01 85.9% 88.3%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 59.0 5.71e-01 95.3% 73.2%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 52.0 5.90e-01 85.9% 95.7%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.76 65.0 5.13e-01 95.3% 83.5%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 55.0 5.89e-01 84.4% 92.6%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 61.0 4.27e-01 87.5% 33.0%
1bbhA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.75 52.0 4.07e-01 75.0% 35.1%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 50.0 4.66e-01 73.4% 63.0%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 62.0 4.60e-01 100.0% 46.6%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 51.0 4.88e-01 75.0% 68.5%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.71 57.0 4.56e-01 90.6% 87.2%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.69 46.0 5.00e-01 70.3% 90.4%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 47.0 4.72e-01 71.9% 79.1%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.67 53.0 3.90e-01 87.5% 93.8%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.14e-01 85.9% 80.3%
6l25A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.67 51.0 3.41e-01 82.8% 24.3%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 47.0 4.49e-01 75.0% 61.5%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 47.0 4.75e-01 75.0% 75.8%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 47.0 4.68e-01 84.4% 72.3%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.82e-01 84.4% 79.3%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 47.0 5.07e-01 81.2% 96.0%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 50.0 4.95e-01 82.8% 76.1%
2wusS00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 50.0 4.63e-01 82.8% 90.2%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 54.0 4.80e-01 93.8% 99.0%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.65 59.0 4.89e-01 100.0% 92.7%
1xwyA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.65 52.0 3.44e-01 87.5% 26.9%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.65 46.0 4.28e-01 75.0% 63.0%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.65 44.0 4.49e-01 75.0% 73.4%
3gg7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.64 48.0 3.29e-01 81.2% 24.3%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.59e-01 84.4% 74.6%
2cazE00 1.20.1440.200 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain 0.64 56.0 4.81e-01 96.9% 80.2%
4pswA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 46.0 4.86e-01 84.4% 92.6%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 46.0 4.74e-01 78.1% 83.1%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 43.0 4.13e-01 76.6% 60.5%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 47.0 3.88e-01 84.4% 46.3%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 46.0 4.54e-01 87.5% 77.9%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.60 44.0 4.69e-01 84.4% 89.3%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.27e-01 84.4% 91.5%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.59 50.0 3.23e-01 100.0% 33.6%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.45e-01 79.7% 48.2%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.58 45.0 4.64e-01 87.5% 100.0%
4e4yA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 3.13e-01 93.8% 29.3%
3fkjA02 1.10.10.2240 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 43.0 4.35e-01 92.2% 89.1%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 42.0 3.09e-01 90.6% 80.4%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 3.67e-01 100.0% 48.5%
2wbiA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 42.0 3.60e-01 98.4% 60.2%
2ip2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.72e-01 89.1% 100.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4288489 4973.1.1.2 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaG_cat_HB 0.90 74.0 6.98e-01 93.8% 74.7%
3272819 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.89 72.0 5.88e-01 85.9% 50.0%
3261482 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.88 68.0 6.41e-01 85.9% 69.3%
4556778 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.86 69.0 5.62e-01 85.9% 48.7%
4046675 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.86 70.0 6.33e-01 93.8% 65.9%
4093017 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.84 68.0 6.46e-01 93.8% 74.7%
4251816 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.83 60.0 6.04e-01 82.8% 75.4%
5043888 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 69.0 6.86e-01 92.2% 93.8%
4945647 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.81 62.0 5.38e-01 84.4% 54.0%
4177735 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.78 58.0 5.78e-01 82.8% 76.9%
3486540 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 63.0 4.36e-01 90.6% 27.7%
3259221 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.78 61.0 6.33e-01 85.9% 91.7%
3218375 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 58.0 6.13e-01 82.8% 96.4%
4577554 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.76 59.0 5.17e-01 84.4% 68.4%
4946659 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.76 60.0 5.04e-01 87.5% 84.5%
3804036 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 53.0 4.32e-01 73.4% 44.3%
4507511 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.75 57.0 4.04e-01 85.9% 27.4%
4623142 4973.1.1.0 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.75 52.0 5.38e-01 76.6% 78.3%
3963650 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 53.0 5.79e-01 82.8% 98.0%
3927015 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.73 60.0 4.82e-01 90.6% 46.4%
3269361 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 60.0 4.20e-01 93.8% 28.1%
4017461 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.73 53.0 4.50e-01 76.6% 61.0%
3638575 109.3.1.170 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 0.72 60.0 3.98e-01 93.8% 23.2%
3806413 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.70 62.0 4.70e-01 100.0% 69.7%
3792592 4003.1.1.1 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.70 64.0 6.22e-01 100.0% 95.7%
3345966 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.70 59.0 5.62e-01 96.9% 80.0%
4974615 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 56.0 5.46e-01 89.1% 84.3%
4945985 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.69 61.0 4.59e-01 100.0% 41.2%
4437630 3705.1.1.0 alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) 0.69 52.0 5.14e-01 84.4% 82.9%
3241028 101.1.2.649 alpha arrays › HTH › HTH › winged helix domain › PF28730 0.68 49.0 4.50e-01 76.6% 58.8%
3378555 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.68 57.0 4.24e-01 100.0% 36.2%
4933603 101.8.1.0 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.65 50.0 3.88e-01 82.8% 51.0%
3280481 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.65 53.0 5.08e-01 90.6% 81.3%
5031949 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.65 49.0 3.36e-01 84.4% 30.8%
4395930 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.65 52.0 3.56e-01 90.6% 29.6%
4992012 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 4.98e-01 81.2% 85.0%
4489939 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.64 50.0 5.15e-01 89.1% 100.0%
3728726 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.64 56.0 5.36e-01 98.4% 93.3%
3214724 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.64 49.0 4.94e-01 85.9% 84.6%
3614274 4307.1.1.0 alpha duplicates or obligate multimers › EB1 dimerisation domain-like › EB1 dimerisation domain-like › EB1 dimerisation domain-like 0.63 44.0 4.53e-01 75.0% 83.3%
3627089 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.62 49.0 4.67e-01 92.2% 81.2%
5064133 101.8.1.0 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.62 48.0 3.55e-01 85.9% 38.3%
3269226 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.61 47.0 4.57e-01 85.9% 78.7%
3679393 109.4.1.68 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Coatomer_E 0.60 40.0 3.32e-01 70.3% 36.7%
3220510 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.60 43.0 4.62e-01 78.1% 100.0%
3283311 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 49.0 4.43e-01 96.9% 74.7%
4952257 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.59 53.0 4.52e-01 100.0% 91.3%
5045789 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.59 40.0 3.61e-01 75.0% 49.4%
4955389 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.58 45.0 4.76e-01 82.8% 96.4%
4964084 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.58 48.0 4.08e-01 100.0% 88.3%
3661193 4198.1.1.2 alpha arrays › TerB-like › TerB-like › TerB-like › ThylakoidFormat 0.56 46.0 3.41e-01 96.9% 59.5%
4966173 101.1.4.97 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DrmE_C 0.50 38.0 3.16e-01 85.9% 45.6%