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NC_022341.1__YP_008531893.1__P749_gp31__00031

Bact-Vir

NC_022341.1__YP_008531893.1__P749_gp31__00031

Identity

Accession:
NC_022341 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pahexavirus› Propionibacterium_phage_PHL113M01

TaxID: 1235655

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-80
PDB
Domain cluster: rep: OR475272.1__WNM67085.1__SEA_SCHOMBER_64__00064__D3-92
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01807.26 best Zn_ribbon_DnaG 37.0 3.30e-09 97.0% 37.8%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.82 71.0 6.13e-01 97.0% 61.8%
1twfB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.65 36.0 3.32e-01 75.8% 40.0%
2x9oA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.63 52.0 3.61e-01 93.9% 72.5%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 46.0 4.34e-01 78.8% 75.9%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 45.0 4.10e-01 80.3% 76.6%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 32.0 3.94e-01 75.8% 91.4%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 45.0 4.24e-01 80.3% 74.7%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 46.0 4.18e-01 84.8% 81.5%
2a90A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 43.0 3.85e-01 80.3% 71.4%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 42.0 3.21e-01 77.3% 34.6%
3holA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 47.0 3.61e-01 95.5% 91.6%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.56 40.0 4.24e-01 77.3% 100.0%
2v1lA00 3.10.450.430 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 0.56 48.0 3.93e-01 100.0% 84.5%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 39.0 3.41e-01 75.8% 54.7%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 39.0 3.42e-01 77.3% 51.9%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 41.0 3.39e-01 81.8% 81.1%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 44.0 4.01e-01 100.0% 88.4%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 40.0 3.49e-01 84.8% 97.2%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.53 40.0 3.39e-01 87.9% 69.5%
1miqA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 38.0 3.00e-01 78.8% 55.9%
2h5eA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 2.99e-01 87.9% 93.6%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.55e-01 97.0% 100.0%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 38.0 3.38e-01 81.8% 77.8%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.50 35.0 2.85e-01 74.2% 49.3%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 37.0 3.41e-01 81.8% 83.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4539347 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.84 76.0 6.52e-01 98.5% 65.0%
3274279 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 74.0 6.75e-01 98.5% 84.7%
8015 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.82 71.0 6.13e-01 97.0% 61.8%
4166935 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.81 72.0 6.24e-01 98.5% 64.0%
4023805 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 72.0 6.58e-01 98.5% 84.7%
4260807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 70.0 6.89e-01 97.0% 100.0%
4680318 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.80 69.0 6.25e-01 98.5% 71.1%
5003468 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.79 71.0 6.01e-01 98.5% 62.9%
3772921 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 70.0 6.11e-01 100.0% 82.0%
4940785 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 68.0 5.62e-01 98.5% 60.0%
3590274 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 61.0 5.53e-01 100.0% 67.8%
3412674 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 62.0 5.67e-01 98.5% 97.8%
3576759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 62.0 6.15e-01 100.0% 95.7%
3928378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 57.0 5.33e-01 95.5% 75.3%
4995759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 56.0 5.28e-01 93.9% 83.7%
4971601 241.14.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.67 57.0 5.68e-01 97.0% 95.7%
3337215 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.66 52.0 4.83e-01 86.4% 82.4%
3907821 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.65 50.0 4.56e-01 84.8% 81.1%
3453009 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.64 51.0 4.68e-01 86.4% 82.4%
3877833 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.63 50.0 4.69e-01 86.4% 87.5%
3874262 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.63 46.0 3.97e-01 80.3% 72.7%
3746817 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 46.0 4.45e-01 80.3% 85.3%
907 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 45.0 3.87e-01 80.3% 56.4%
3907820 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.61 47.0 4.55e-01 84.8% 97.3%
3711220 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 45.0 4.55e-01 80.3% 95.4%
3890381 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 44.0 4.22e-01 80.3% 80.0%
3704287 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.60 43.0 4.39e-01 77.3% 83.1%
909 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.59 43.0 4.10e-01 78.8% 86.3%
3538735 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.58 43.0 3.62e-01 81.8% 80.8%
3241448 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 45.0 3.89e-01 87.9% 78.2%
4804032 4963.1.2.1 ↗ alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal domain in vesicular stomatitis virus RNA polymerase L › Mononeg_RNA_pol 0.56 49.0 3.43e-01 98.5% 31.4%
3226400 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 43.0 3.96e-01 87.9% 71.1%
3990709 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 43.0 3.51e-01 95.5% 44.6%
3254632 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 42.0 4.23e-01 84.8% 93.8%
3746407 5.1.5.64 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 0.54 40.0 2.48e-01 80.3% 40.7%
3600915 77.3.1.0 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.54 42.0 2.72e-01 89.4% 73.1%
4001570 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.54 35.0 3.44e-01 84.8% 58.7%
3789912 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 41.0 3.89e-01 86.4% 72.9%
3403338 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.54 42.0 4.05e-01 92.4% 76.0%
3956314 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.53 40.0 4.08e-01 84.8% 86.2%
3896401 363.1.1.1 ↗ few secondary structure elements › Thyroglobulin type-1 domain › Thyroglobulin type-1 domain › Thyroglobulin type-1 domain › Thyroglobulin_1 0.53 37.0 3.59e-01 74.2% 84.0%
26896 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.53 41.0 3.83e-01 87.9% 74.4%
3270757 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 41.0 3.91e-01 86.4% 95.0%
3270466 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.53 42.0 3.39e-01 97.0% 74.4%
3255441 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.53 39.0 3.20e-01 80.3% 75.2%
4863675 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 42.0 3.74e-01 92.4% 92.4%
4150519 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.52 40.0 3.37e-01 86.4% 81.3%
3926475 363.1.1.1 ↗ few secondary structure elements › Thyroglobulin type-1 domain › Thyroglobulin type-1 domain › Thyroglobulin type-1 domain › Thyroglobulin_1 0.52 36.0 3.71e-01 74.2% 81.5%
3843142 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.52 41.0 3.30e-01 87.9% 73.3%
3517104 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.51 38.0 3.26e-01 80.3% 77.3%
4255854 4294.1.1.8 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112 0.51 36.0 3.95e-01 78.8% 100.0%
3548728 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.50 37.0 3.40e-01 80.3% 84.4%
3376270 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.50 37.0 3.64e-01 100.0% 72.0%
3481222 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 36.0 3.30e-01 77.3% 84.4%