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NC_022751.1__YP_008766984.1__V420_gp26__00026
Bact-VirNC_022751.1__YP_008766984.1__V420_gp26__00026
Identity
- Accession:
- NC_022751 ↗
- Kingdom:
- phage
Quality
38.8
mean pLDDT
Taxonomy
TaxID: 434346
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1406-1463
D2
medium
residues 1328-1398
D3
medium
residues 1487-1585
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1szhA02 | 1.10.150.370 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain | 0.72 | 49.0 | 5.30e-01 | 72.7% | 84.1% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.72 | 52.0 | 5.69e-01 | 75.8% | 100.0% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.71 | 51.0 | 5.32e-01 | 78.8% | 82.2% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 50.0 | 5.56e-01 | 75.8% | 100.0% |
| 1xqoA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.69 | 50.0 | 4.54e-01 | 76.8% | 57.8% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.67 | 53.0 | 4.54e-01 | 84.8% | 94.3% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.67 | 50.0 | 4.60e-01 | 78.8% | 91.4% |
| 1ac1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 44.0 | 3.55e-01 | 76.8% | 35.6% |
| 1hlbA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 52.0 | 4.47e-01 | 90.9% | 84.1% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.62 | 48.0 | 4.28e-01 | 83.8% | 97.2% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 48.0 | 4.90e-01 | 85.9% | 86.5% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 49.0 | 4.40e-01 | 92.9% | 89.8% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 37.0 | 4.33e-01 | 70.7% | 91.2% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.59 | 48.0 | 3.78e-01 | 88.9% | 86.3% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 49.0 | 4.44e-01 | 93.9% | 87.9% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 45.0 | 4.28e-01 | 84.8% | 91.8% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 46.0 | 4.88e-01 | 91.9% | 100.0% |
| 1ltmA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.56 | 42.0 | 3.49e-01 | 77.8% | 81.5% |
| 4at7A01 | 1.10.1410.40 | Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › | 0.56 | 47.0 | 3.83e-01 | 90.9% | 95.6% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 43.0 | 3.89e-01 | 84.8% | 71.3% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.56 | 41.0 | 3.66e-01 | 76.8% | 55.3% |
| 4gxzD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 38.0 | 3.23e-01 | 72.7% | 54.7% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.55 | 42.0 | 4.41e-01 | 90.9% | 95.3% |
| 6ks6Q02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.54 | 43.0 | 4.10e-01 | 84.8% | 94.0% |
| 3cx3B01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 40.0 | 3.53e-01 | 79.8% | 89.0% |
| 3vkgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.54 | 43.0 | 3.67e-01 | 85.9% | 70.6% |
| 3nwoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 42.0 | 3.12e-01 | 87.9% | 75.6% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 39.0 | 3.64e-01 | 79.8% | 62.3% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 33.0 | 3.65e-01 | 88.9% | 82.7% |
| 2lwxA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.52 | 37.0 | 3.90e-01 | 83.8% | 83.0% |
| 5domA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.52 | 43.0 | 4.50e-01 | 89.9% | 100.0% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 40.0 | 3.54e-01 | 84.8% | 72.7% |
| 3lvyE01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.51 | 39.0 | 3.29e-01 | 81.8% | 49.7% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3961048 | 4953.1.1.7 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › AI-2E_transport | 0.73 | 54.0 | 5.66e-01 | 77.8% | 91.1% |
| 4940401 | 2485.1.1.67 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT | 0.71 | 45.0 | 3.70e-01 | 76.8% | 35.6% |
| 3587222 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.69 | 58.0 | 4.30e-01 | 89.9% | 70.2% |
| 3185014 | 3985.1.1.0 ↗ | alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) | 0.69 | 50.0 | 5.07e-01 | 76.8% | 92.0% |
| 3942099 | 605.1.1.209 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › AI-2E_transport | 0.68 | 51.0 | 5.17e-01 | 80.8% | 86.0% |
| 3283708 | 1075.4.1.38 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › AI-2E_transport | 0.67 | 54.0 | 4.03e-01 | 86.9% | 40.4% |
| 4028725 | 102.1.2.23 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Stevor | 0.67 | 50.0 | 5.43e-01 | 81.8% | 96.2% |
| 3247658 | 2485.1.1.49 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 | 0.65 | 47.0 | 3.89e-01 | 75.8% | 100.0% |
| 4951918 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.65 | 38.0 | 3.88e-01 | 88.9% | 60.0% |
| 3505950 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.64 | 51.0 | 5.34e-01 | 86.9% | 95.6% |
| 1174232 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.64 | 40.0 | 4.58e-01 | 92.9% | 87.3% |
| 3185015 | 3985.1.1.0 ↗ | alpha bundles › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) › CFEM domain (contains eight cysteines) | 0.64 | 46.0 | 4.78e-01 | 74.7% | 98.9% |
| 4457750 | 3567.1.1.112 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › AI-2E_transport | 0.64 | 48.0 | 4.66e-01 | 79.8% | 76.4% |
| 4026434 | 4120.1.1.35 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › Stevor | 0.62 | 47.0 | 4.36e-01 | 80.8% | 64.8% |
| 4934796 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.61 | 47.0 | 4.89e-01 | 82.8% | 94.4% |
| 5051162 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.60 | 45.0 | 4.84e-01 | 81.8% | 97.6% |
| 4169890 | 5.1.11.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel | 0.59 | 52.0 | 3.30e-01 | 99.0% | 25.0% |
| 4636592 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.59 | 43.0 | 3.84e-01 | 77.8% | 60.7% |
| 3216009 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.58 | 44.0 | 3.30e-01 | 81.8% | 75.3% |
| 4969592 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 45.0 | 3.06e-01 | 88.9% | 21.9% |
| 3929481 | 109.49.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central | 0.56 | 48.0 | 3.62e-01 | 100.0% | 38.4% |
| 3602825 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.55 | 42.0 | 3.95e-01 | 88.9% | 64.6% |
| 4948766 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.53 | 45.0 | 3.96e-01 | 92.9% | 85.0% |
| 4950911 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.52 | 43.0 | 3.88e-01 | 94.9% | 63.4% |
| 4431924 | 6058.1.1.1 ↗ | alpha arrays › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › DAO_C | 0.52 | 40.0 | 3.65e-01 | 84.8% | 60.7% |
| 5031268 | 1075.1.1.3 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 | 0.51 | 39.0 | 2.95e-01 | 81.8% | 93.8% |
| 5062478 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 34.0 | 3.62e-01 | 88.9% | 75.6% |
| 4057450 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.51 | 42.0 | 3.40e-01 | 92.9% | 70.5% |