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NC_022763.1__YP_008770346.1__Spock_122__00122

Bact-Vir

NC_022763.1__YP_008770346.1__Spock_122__00122

Identity

Accession:
NC_022763 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bequatrovirus› Bacillus_phage_Spock

TaxID: 1406791

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-68
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00144__D16-64
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 51.0 4.95e-01 80.0% 98.4%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 45.0 3.44e-01 94.5% 30.0%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 51.0 4.89e-01 89.1% 98.5%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.65 41.0 3.74e-01 90.9% 46.8%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 50.0 4.17e-01 85.5% 82.7%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.64 43.0 3.54e-01 80.0% 38.0%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 3.98e-01 80.0% 100.0%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 44.0 3.27e-01 100.0% 26.9%
3nqiA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.62 47.0 4.49e-01 83.6% 93.8%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 48.0 4.61e-01 89.1% 100.0%
1kxlA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 51.0 3.60e-01 98.2% 70.6%
1g6q102 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.60 45.0 3.26e-01 85.5% 49.5%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 51.0 3.77e-01 100.0% 47.5%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 48.0 4.01e-01 92.7% 92.2%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 52.0 4.26e-01 100.0% 78.4%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 50.0 3.87e-01 100.0% 60.3%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.69e-01 85.5% 91.9%
3c8iA00 2.40.410.10 Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily 0.58 46.0 3.76e-01 100.0% 78.7%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 4.01e-01 81.8% 100.0%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 39.0 3.18e-01 70.9% 59.2%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 40.0 2.88e-01 87.3% 23.5%
3i9sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 48.0 3.54e-01 100.0% 68.3%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 49.0 3.85e-01 100.0% 68.9%
3rtxA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.56 42.0 3.11e-01 85.5% 41.8%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 46.0 3.46e-01 92.7% 77.7%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 36.0 3.06e-01 83.6% 37.1%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.71e-01 90.9% 50.9%
3kreA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 43.0 3.25e-01 87.3% 92.1%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.29e-01 85.5% 93.2%
2ltjA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.54 42.0 3.42e-01 87.3% 54.1%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.37e-01 98.2% 58.0%
3co8A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.54 46.0 3.46e-01 98.2% 50.7%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.58e-01 87.3% 89.7%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.53 38.0 3.70e-01 85.5% 94.3%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 38.0 2.77e-01 78.2% 54.5%
4beuA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.53 44.0 3.21e-01 98.2% 44.6%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.32e-01 74.5% 84.4%
4lusB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.53 44.0 3.31e-01 98.2% 51.0%
4lesA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.31e-01 100.0% 84.5%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 37.0 2.91e-01 80.0% 75.7%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 44.0 3.56e-01 98.2% 54.4%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 44.0 3.65e-01 96.4% 97.0%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.27e-01 87.3% 66.1%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 33.0 2.21e-01 83.6% 12.8%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.52 40.0 3.09e-01 100.0% 86.7%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.62e-01 100.0% 62.3%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 2.97e-01 87.3% 35.8%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 37.0 2.54e-01 98.2% 20.8%
5zl6A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.50 42.0 3.15e-01 98.2% 50.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3774440 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 56.0 4.13e-01 89.1% 91.3%
4193853 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.69 51.0 4.92e-01 81.8% 98.5%
3589333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.02e-01 100.0% 42.1%
4138994 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.69 49.0 4.63e-01 78.2% 98.6%
3838288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 57.0 4.60e-01 96.4% 75.7%
3854647 206.1.3.41 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter 0.67 59.0 3.31e-01 100.0% 19.1%
4038328 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.66 52.0 5.01e-01 89.1% 98.5%
3914307 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 52.0 4.31e-01 89.1% 99.0%
4680387 1.1.10.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) 0.66 40.0 3.57e-01 87.3% 41.2%
3214339 63.1.1.6 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › MRH_ELAPOR1_9th 0.66 54.0 3.75e-01 96.4% 71.0%
3580295 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 47.0 3.36e-01 100.0% 24.6%
5058096 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 49.0 4.22e-01 81.8% 84.7%
3793090 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.64 46.0 2.81e-01 100.0% 11.0%
4323154 2.1.1.341 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30208 0.64 54.0 4.31e-01 98.2% 64.3%
3891105 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 46.0 3.88e-01 81.8% 100.0%
3592754 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 50.0 4.14e-01 100.0% 88.2%
3223253 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 48.0 3.69e-01 87.3% 36.8%
4120506 243.11.1.4 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.61 45.0 4.03e-01 100.0% 55.0%
5071733 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.61 44.0 3.91e-01 100.0% 50.0%
3882182 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.60 47.0 3.68e-01 100.0% 38.5%
5042160 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 44.0 4.37e-01 83.6% 95.0%
3098017 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 4.14e-01 100.0% 70.8%
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.59 45.0 4.43e-01 83.6% 96.7%
5030555 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.58 31.0 3.52e-01 81.8% 65.0%
3274510 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.58 47.0 4.36e-01 96.4% 100.0%
None — 0.58 50.0 3.60e-01 100.0% 57.1%
3702616 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 50.0 3.84e-01 96.4% 62.4%
3708593 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 3.71e-01 92.7% 83.5%
4599318 2.1.1.299 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 0.57 40.0 3.66e-01 96.4% 52.5%
4942766 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 4.02e-01 100.0% 77.0%
4936007 3994.1.1.2 ↗ a+b two layers › C-P lyase subunit PhnG › C-P lyase subunit PhnG › C-P lyase subunit PhnG › PhnG 0.56 42.0 3.17e-01 89.1% 31.9%
4022461 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.56 48.0 3.29e-01 100.0% 54.6%
3990002 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.56 45.0 4.08e-01 100.0% 71.8%
3734354 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 47.0 3.60e-01 100.0% 70.0%
4137739 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.55 39.0 2.79e-01 80.0% 49.7%
3208973 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.54 43.0 3.42e-01 87.3% 43.0%
4964338 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.54 39.0 2.62e-01 81.8% 18.4%
4928055 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.54 41.0 3.80e-01 87.3% 73.0%
3672911 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.54 39.0 2.74e-01 80.0% 54.5%
4988512 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 37.0 2.68e-01 74.5% 39.3%
3480213 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 39.0 3.97e-01 87.3% 81.8%
4131098 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.53 43.0 3.63e-01 96.4% 51.0%
3720340 11.1.1.150 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet 0.53 47.0 3.27e-01 100.0% 61.5%
1954221 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.52 38.0 3.59e-01 98.2% 62.7%
4297163 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.52 42.0 3.49e-01 96.4% 48.6%
4965259 218.1.1.5 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MenC_N 0.52 42.0 3.45e-01 89.1% 54.0%
3827943 1.1.11.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.52 45.0 3.83e-01 98.2% 66.7%
3223140 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 44.0 3.50e-01 100.0% 56.7%
3396837 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.50 41.0 3.94e-01 100.0% 82.9%
3703043 5.1.4.597 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_3 0.50 42.0 2.71e-01 100.0% 56.3%
5056883 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.50 41.0 3.41e-01 100.0% 58.3%